View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_high_13 (Length: 339)
Name: NF0151_1D_high_13
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_high_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 23 - 339
Target Start/End: Complemental strand, 54842117 - 54841801
Alignment:
| Q |
23 |
cctattagttttctgtttgtggaaaatgtgtagttagagaatcaaatgtcccttctattcattcaaaaagtaatattgactggcactttgattggtgtga |
122 |
Q |
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| T |
54842117 |
cctattagttttctgtttgtggaaaatgtgtagttagagaatcaaatgtcccttctatgcattcaaaaaataatattgactggcactttgattggtgtga |
54842018 |
T |
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| Q |
123 |
cggtttttaattgcaaagcatagagttggatgcctaaatgcaagagggtgttttatccaactgttgtatgtctattacaaaatgccttgtgtttatccat |
222 |
Q |
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| T |
54842017 |
cggtttttaattgcaaagcatagagttggatgcctaaatgcaagagggtgttttatccaactgttgtatgtctattacaaaatgccttgtgtttatccat |
54841918 |
T |
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| Q |
223 |
ttgttaaagttttaatgacagaattcgatatatgaattcctaatctattgtgctttacattagcaaagatcagtagttcatgtttttctgtccaattaga |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
54841917 |
ttgttaaagttttaatgacagaattcgatatatgaattcctaatgtattgtgctttacattaacaaagatcagtagttcatgtttttcagtccaattaga |
54841818 |
T |
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| Q |
323 |
atatacaggtttgaaaa |
339 |
Q |
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||||||||||||||||| |
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| T |
54841817 |
atatacaggtttgaaaa |
54841801 |
T |
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