View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0151_1D_high_15 (Length: 323)

Name: NF0151_1D_high_15
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0151_1D_high_15
NF0151_1D_high_15
[»] chr2 (19 HSPs)
chr2 (1-302)||(39205835-39206136)
chr2 (4-302)||(39196606-39196904)
chr2 (20-302)||(39223502-39223781)
chr2 (189-302)||(39163058-39163171)
chr2 (22-296)||(39387608-39387882)
chr2 (4-279)||(39216468-39216743)
chr2 (7-288)||(39370919-39371200)
chr2 (21-208)||(39396765-39396952)
chr2 (63-198)||(2362574-2362706)
chr2 (64-214)||(39138522-39138672)
chr2 (110-214)||(39472972-39473076)
chr2 (151-208)||(39493682-39493739)
chr2 (4-210)||(44624659-44624868)
chr2 (151-210)||(39604196-39604255)
chr2 (154-210)||(39144476-39144532)
chr2 (154-210)||(44615286-44615342)
chr2 (154-206)||(39152943-39152995)
chr2 (154-210)||(39425779-39425835)
chr2 (154-214)||(44895353-44895413)
[»] chr5 (2 HSPs)
chr5 (4-302)||(33562077-33562375)
chr5 (142-214)||(17060522-17060594)
[»] chr6 (1 HSPs)
chr6 (22-286)||(16114171-16114435)
[»] chr4 (1 HSPs)
chr4 (63-198)||(33152038-33152170)
[»] chr8 (1 HSPs)
chr8 (4-95)||(45342960-45343051)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 39205835 - 39206136
Alignment:
Q  1 atcttagctttcaagtcaaatgctagcttcaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39205835 atcttagctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatattt 39205934  T
Q  101 ggtaatcagcaataatcacaacattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39205935 ggtaatcagcaataatcacaacattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgctgattc 39206034  T
Q  201 ttgcagattaactaaaataccattgtaaagagatagaactccgtcagttttctcgcttgtgcccaactgcagacttgttccaccaaaggcacgactagat 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39206035 ttgcagattaactaaaataccattgtaaagagattgaactccgtcagttttctcgcttgtgcccaactgcagacttgttccaccaaaggcacgactagat 39206134  T
Q  301 tg 302  Q
    ||    
T  39206135 tg 39206136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 4 - 302
Target Start/End: Original strand, 39196606 - 39196904
Alignment:
Q  4 ttagctttcaagtcaaatgctagcttcaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttggt 103  Q
    ||||||||||| |||||||||||||||||||||| ||| | ||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||    
T  39196606 ttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtttaatatctggtgagattctcatcagttgttccagcagatagatttggt 39196705  T
Q  104 aatcagcaataatcacaacattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttg 203  Q
    ||||| |||||| |||| |||||||||||||||  ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39196706 aatcaacaataaccacagcattatctcccttttcccactgtggaatgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttg 39196805  T
Q  204 cagattaactaaaataccattgtaaagagatagaactccgtcagttttctcgcttgtgcccaactgcagacttgttccaccaaaggcacgactagattg 302  Q
    |||||||||||||||||  ||| |||| ||   |||||| ||||||||||| |||||| ||||||||| |||| |||||||||||||||| || |||||    
T  39196806 cagattaactaaaatactgttgaaaagtgactcaactccatcagttttctcacttgtgtccaactgcaaacttcttccaccaaaggcacggcttgattg 39196904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 39223781 - 39223502
Alignment:
Q  20 atgctagcttcaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttggtaatcagcaataatcac 119  Q
    |||||||||||||||||||||  | | |||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||||||| |||||||||    
T  39223781 atgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagtagatggatttggtaatcagtaataatcac 39223682  T
Q  120 aacattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagattaactaaaata 219  Q
    |   || ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39223681 a---ttgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagattaactaaaaca 39223585  T
Q  220 ccattgtaaagagatagaactccgtcagttttctcgcttgtgcccaactgcagacttgttccaccaaaggcacgactagattg 302  Q
    |||||| |||| ||   |||||| |||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||    
T  39223584 ccattgaaaagtgactcaactccatcagttttctcgcttgtgcccaactgcaaacttattccaccaaaggcatgacttgattg 39223502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 39163171 - 39163058
Alignment:
Q  189 atctgatgattcttgcagattaactaaaataccattgtaaagagatagaactccgtcagttttctcgcttgtgcccaactgcagacttgttccaccaaag 288  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39163171 atctgctgattcttgcagattaactaaaataccattgtaaagagattgaactccgtcagttttctcgcttgtgcccaactgcagacttgttccaccaaag 39163072  T
Q  289 gcacgactagattg 302  Q
    ||||||||||||||    
T  39163071 gcacgactagattg 39163058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 39387608 - 39387882
Alignment:
Q  22 gctagcttcaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttggtaatcagcaataatcacaa 121  Q
    |||||||||||||||| |||    ||||||| ||||||   ||||||| |||||||||||||||| |||| ||  ||||||||||||||||||||||||     
T  39387608 gctagcttcaatgcttctttttttacacaagtttcaatttttggtgaggttctcatcagttgttctagcatatggatttggtaatcagcaataatcacag 39387707  T
Q  122 cattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagattaactaaaatacc 221  Q
     ||| ||  ||||||| ||||||||| | |  ||||||| |||||| |||||||||||||||||||| || ||||||||| ||| | |||||||||| |     
T  39387708 aattgtcaaccttttgacacagtggaataacagggttcaatatcatatccaaaacaagttttgatgggtccgatgattctcgcatactaactaaaattct 39387807  T
Q  222 attgtaaagagatagaactccgtcagttttctcgcttgtgcccaactgcagacttgttccaccaaaggcacgact 296  Q
     |||||||| |||  ||||||| |||||||||| |||||| ||||||||| |||||||||||||| || ||||||    
T  39387808 tttgtaaagtgattcaactccgccagttttctcacttgtgtccaactgcaaacttgttccaccaatggtacgact 39387882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 39216743 - 39216468
Alignment:
Q  4 ttagctttcaagtcaaatgctagcttcaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttggt 103  Q
    |||| |||||| |||||||||||||||||||||| ||  |  |||||||||| ||||   ||||||||| ||||||||||||| |||  ||| || ||||    
T  39216743 ttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagcgaataaatatggt 39216644  T
Q  104 aatcagcaataatcacaacattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttg 203  Q
    ||||||||||||||||| |||| |||||||| |  |||| | || |  | |||||| ||||||| |||||||||||| |||||||||||||||| ||| |    
T  39216643 aatcagcaataatcacagcattgtctcccttcttacacaattgaatagtagggttctgtatcatatccaaaacaagtcttgatggatctgatgagtctag 39216544  T
Q  204 cagattaactaaaataccattgtaaagagatagaactccgtcagttttctcgcttgtgcccaactgcagacttgtt 279  Q
    || |||| |||||||| |||||||||| || | |||| | ||||||||||   ||||| ||||||||| |||||||    
T  39216543 caaattagctaaaatatcattgtaaagtgacacaacttcatcagttttcttagttgtgtccaactgcaaacttgtt 39216468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 288
Target Start/End: Complemental strand, 39371200 - 39370919
Alignment:
Q  7 gctttcaagtcaaatgctagcttcaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttggtaat 106  Q
    |||||||  |||| |||||||||||||||||  |  |  |||||||| ||||||  |||||||||| |||| |||||||| |||||    ||||||||||    
T  39371200 gctttcatatcaagtgctagcttcaatgcttcatctcttacacaaggctcaatatttggtgagattttcataagttgttctagcagcaggatttggtaat 39371101  T
Q  107 cagcaataatcacaacattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcag 206  Q
    |||||||||| |||||||| |||||||| |  | |||||||   ||||  ||| ||||||| |||||||||| | |||||||||||||||||||| ||||    
T  39371100 cagcaataattacaacattgtctcccttcttactcagtggaacaatggtattctgtatcatatccaaaacaaatcttgatggatctgatgattctagcag 39371001  T
Q  207 attaactaaaataccattgtaaagagatagaactccgtcagttttctcgcttgtgcccaactgcagacttgttccaccaaag 288  Q
    || ||||||||||||| | | ||| ||   || ||| ||||||||||| ||| ||  |||||||| ||||||||||||||||    
T  39371000 atcaactaaaataccagtatgaagtgactcaagtccatcagttttctcacttatgtgcaactgcaaacttgttccaccaaag 39370919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 39396765 - 39396952
Alignment:
Q  21 tgctagcttcaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttggtaatcagcaataatcaca 120  Q
    ||||||||||| ||||| ||  |  |||||||||  ||||  |||||||||||||||||||| ||| ||||  || || |||  |||  |||||| ||||    
T  39396765 tgctagcttcagtgcttcttctcttacacaaggtctaatagttggtgagattctcatcagttcttctagcacgtagatgtggctatcctcaataaccaca 39396864  T
Q  121 acattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagat 208  Q
     |||| |||||||| |  ||||||||| | ||||||||  |||| || |||||||||||| |||||||||||||||||||| ||||||    
T  39396865 ccattgtctcccttcttacacagtggaataatggggttttgtattatatccaaaacaagtcttgatggatctgatgattctagcagat 39396952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 2362706 - 2362574
Alignment:
Q  63 tggtgagattctcatcagttgttcaagcagatatatttggtaatcagcaataatcacaacattatctcccttttggcacagtggagtgatggggttcagt 162  Q
    |||||||||||||||||||||||| |||||||  || |||| |||| ||||||| |||||||| ||||||||    ||| ||||| ||||||||||| |     
T  2362706 tggtgagattctcatcagttgttcgagcagatcaatgtggtgatcatcaataattacaacattttctccctt---acactgtggaatgatggggttctgg 2362610  T
Q  163 atcatttccaaaacaagttttgatggatctgatgat 198  Q
    || || || ||||||  |||||||||||||||||||    
T  2362609 attatatctaaaacatcttttgatggatctgatgat 2362574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 39138672 - 39138522
Alignment:
Q  64 ggtgagattctcatcagttgttcaagcagatatatttggtaatcagcaataatcacaacattatctcccttttggcacagtggagtgatggggttcagta 163  Q
    ||||||||||||||||||||||| |||||| | ||   |  |||| ||||||||||| |||  ||||| || |  ||| ||||| | || || ||| |||    
T  39138672 ggtgagattctcatcagttgttctagcagaaagatgcagccatcatcaataatcacagcatgttctccattcttacaccgtggaataattggcttctgta 39138573  T
Q  164 tcatttccaaaacaagttttgatggatctgatgattcttgcagattaacta 214  Q
    | || |||||||||| ||||| |||||||||||||||||||||||||||||    
T  39138572 ttatatccaaaacaacttttgctggatctgatgattcttgcagattaacta 39138522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 39472972 - 39473076
Alignment:
Q  110 caataatcacaacattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatt 209  Q
    ||||||||||| |||  |||||||| |  ||| ||||| | || ||||||||||| || |||| ||||| ||||| |||||||||||||||||||||||     
T  39472972 caataatcacagcatggtctcccttcttacaccgtggaataatcgggttcagtattatatccagaacaaattttgctggatctgatgattcttgcagatc 39473071  T
Q  210 aacta 214  Q
    |||||    
T  39473072 aacta 39473076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 39493682 - 39493739
Alignment:
Q  151 atggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagat 208  Q
    ||||||||| |||| || |||||||||| ||||||||||||||||||| |||||||||    
T  39493682 atggggttctgtattatatccaaaacaacttttgatggatctgatgatccttgcagat 39493739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 44624868 - 44624659
Alignment:
Q  4 ttagctttcaagtcaaatgctagcttcaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttgg- 102  Q
    ||||||||||| |||   ||||||||||||||||  |  |  |||||||||| ||||  |||||||||| ||||||||| ||| |||||||| ||  ||     
T  44624868 ttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggc 44624769  T
Q  103 --taatcagcaataatcacaacattatctccctt-ttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgatt 199  Q
      | |||| ||||||||||| | || ||||| || || | | |||||  | |||||||||||||| || |||||||||| ||||| ||||||||||||||    
T  44624768 tttcatcatcaataatcacagctttgtctcctttcttagga-agtgggataatggggttcagtattatatccaaaacaatttttgctggatctgatgatt 44624670  T
Q  200 cttgcagatta 210  Q
    || ||| ||||    
T  44624669 ctcgcaaatta 44624659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 39604255 - 39604196
Alignment:
Q  151 atggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 210  Q
    ||||| ||| |||| || |||||||||| ||||||||||||||||||| |||||||||||    
T  39604255 atgggattctgtattatatccaaaacaacttttgatggatctgatgatccttgcagatta 39604196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 39144532 - 39144476
Alignment:
Q  154 gggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 210  Q
    |||||| |||| || |||||||||| ||||||||||||||||||| |||| ||||||    
T  39144532 gggttctgtattatatccaaaacaacttttgatggatctgatgatccttgaagatta 39144476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 44615342 - 44615286
Alignment:
Q  154 gggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 210  Q
    ||||| ||||| || |||||||||||||||| |||||||||||||||| ||| ||||    
T  44615342 gggtttagtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 44615286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 39152995 - 39152943
Alignment:
Q  154 gggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcag 206  Q
    |||||| |||| || ||||| |||| ||||| |||||||||||||||||||||    
T  39152995 gggttctgtattatatccaacacaatttttgctggatctgatgattcttgcag 39152943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 39425779 - 39425835
Alignment:
Q  154 gggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 210  Q
    |||||| |||| ||||||||||||| |||||||||||||||  |  |||||||||||    
T  39425779 gggttctgtattatttccaaaacaacttttgatggatctgaaaagccttgcagatta 39425835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 44895353 - 44895413
Alignment:
Q  154 gggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagattaacta 214  Q
    |||||| |||| || ||||||||||||||||  |||| |||||||||| ||||| ||||||    
T  44895353 gggttctgtattatatccaaaacaagttttgcaggatttgatgattctcgcagagtaacta 44895413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 302
Target Start/End: Complemental strand, 33562375 - 33562077
Alignment:
Q  4 ttagctttcaagtcaaatgctagcttcaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttggt 103  Q
    ||||||||||| |||||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||    
T  33562375 ttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggttcaatatctggtgagattctcatcagttgttccagaagatagatttggt 33562276  T
Q  104 aatcagcaataatcacaacattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttg 203  Q
    ||||| ||||||| |||||||| ||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33562275 aatcaacaataatgacaacattgtctcccttttgacacagtggaaagatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttg 33562176  T
Q  204 cagattaactaaaataccattgtaaagagatagaactccgtcagttttctcgcttgtgcccaactgcagacttgttccaccaaaggcacgactagattg 302  Q
    ||||||| ||||||||||||||||||| ||   |||||| ||||||||||| |||||| ||||||||| |||||| | ||||||||||||||| |||||    
T  33562175 cagattagctaaaataccattgtaaagtgactcaactccatcagttttctcacttgtgtccaactgcaaacttgtactaccaaaggcacgacttgattg 33562077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 17060594 - 17060522
Alignment:
Q  142 agtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagattaacta 214  Q
    |||||| | |||||||||| ||| |  |||||||||| |||||||||||| ||||||||||||| ||||||||    
T  17060594 agtggaataatggggttcattattacatccaaaacaatttttgatggatccgatgattcttgcaaattaacta 17060522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 16114435 - 16114171
Alignment:
Q  22 gctagcttcaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttggtaatcagcaataatcacaa 121  Q
    |||||||||||||||||||  |  |||| ||||| ||||  |||||| ||||||||||||| ||| | |||||| || ||| | ||| |||||||||||     
T  16114435 gctagcttcaatgctttttctcttacacgaggtttaatagttggtgatattctcatcagttcttctaacagatagatgtggcattcatcaataatcacag 16114336  T
Q  122 cattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagattaactaaaatacc 221  Q
    |||| |||||||| |  |||||||||||   ||||||| |||| || |||||||||||| |||||||||||| |||||||||||||| ||| |||||  |    
T  16114335 cattgtctcccttcttacacagtggagtaccggggttctgtattatatccaaaacaagtcttgatggatctgctgattcttgcagataaacaaaaatgtc 16114236  T
Q  222 attgtaaagagatagaactccgtcagttttctcgcttgtgcccaactgcagacttgttccaccaa 286  Q
     ||| |||| ||   |||  | ||||||||||||||||||  |||||||| |||||||| |||||    
T  16114235 tttgcaaagtgactcaacgtcatcagttttctcgcttgtgtacaactgcaaacttgttctaccaa 16114171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 33152170 - 33152038
Alignment:
Q  63 tggtgagattctcatcagttgttcaagcagatatatttggtaatcagcaataatcacaacattatctcccttttggcacagtggagtgatggggttcagt 162  Q
    |||||||||||||||||||||||| |||| ||  || ||| ||||| |||||||  || |||| ||||||||    |||| |||| ||||||||||| |     
T  33152170 tggtgagattctcatcagttgttcgagcaaatcaatgtggaaatcatcaataattgcagcattgtctccctta---cacaatggaatgatggggttctgg 33152074  T
Q  163 atcatttccaaaacaagttttgatggatctgatgat 198  Q
    || || |||||||||  |||||||||||||||||||    
T  33152073 ataatatccaaaacatattttgatggatctgatgat 33152038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 45343051 - 45342960
Alignment:
Q  4 ttagctttcaagtcaaatgctagcttcaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagata 95  Q
    ||||||||||| |||| ||||||||| ||||||| ||  |  |||||||||| ||||  |||  ||||||||||||||||||| || |||||    
T  45343051 ttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgttctaggagata 45342960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1181 times since January 2019
Visitors: 1527