View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0151_1D_high_20 (Length: 291)
Name: NF0151_1D_high_20
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0151_1D_high_20
[» ] scaffold0048 (1 HSPs)
[» ] scaffold0103 (3 HSPs)
Alignment Details
Target: scaffold0048 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 76609 - 76879
Alignment:
Q
9
taggaagaacgataattggcgaggtaaaaaccttaaactagaaacgaggaatgaagcgttgccgttagaattaagtacgtaggaaataaggggagctagt
108
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||||
T
76609
taggaagaacgataattggcgaggtaaaaaccttaaactagaaacgaggaatggatcgttgccgttagaatgaagtacgtagtaaataaggggagctagt
76708
T
Q
109
gttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggcgacgatgtttagtaatgaagaatccatgatgt
208
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| | |||||||
T
76709
gttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggtgacaatgttgagtaatgaagaagcgatgatgt
76808
T
Q
209
tgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgtaattgggagctgttgatgatgt
279
Q
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||
T
76809
tgattaatgatcacgtaaatgatgagtttgacaaatgaaattatgttgtaattgtgagctgttgatgatgt
76879
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0103 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 257
Target Start/End: Complemental strand, 17622 - 17452
Alignment:
Q
92
aaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggcgacgatgtttagtaa
191
Q
||||||||||| | |||||||||| ||||||||||| |||| |||||| |||||||||| ||| |||||| ||||||||| ||||||||| |||||
T
17622
aaataaggggatccagtgttgagtttaggttttaattacaa-tgttgataaatgacaatgctgagaaatgacaatgttgagtaatgacgatgttgagtaa
17524
T
Q
192
tgaagaatccatgatgttga------ttaatgatcacgtaaataatgagtctgacaaatgaaattatgttgt
257
Q
||||||| |||||||||||| || ||||| |||||||| |||||||| ||| |||||||||||||||
T
17523
tgaagaaaccatgatgttgaataatgttgatgatgacgtaaatgatgagtctaacagatgaaattatgttgt
17452
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 17704 - 17639
Alignment:
Q
146
acaatgttgaataatgacgatgttgagtggcgacgatgtttagtaatgaagaatccatgatgttga
211
Q
|||||||||| |||||| ||||||||| |||||||| |||||||||||| ||||||||||||
T
17704
acaatgttgagaaatgacaatgttgagtaatgacgatgtggagtaatgaagaaaccatgatgttga
17639
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0103; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 17702 - 17661
Alignment:
Q
132
aatgttgagtaatgacaatgttgaataatgacgatgttgagt
173
Q
||||||||| |||||||||||||| |||||||||||| ||||
T
17702
aatgttgagaaatgacaatgttgagtaatgacgatgtggagt
17661
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 257
Target Start/End: Original strand, 16932654 - 16932824
Alignment:
Q
92
aaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggcgacgatgtttagtaa
191
Q
||||||||||| | |||||||||| ||||||||||| |||| |||||| |||||||||| ||| |||||| ||||||||| ||||||||| |||||
T
16932654
aaataaggggatccagtgttgagtttaggttttaattacaa-tgttgataaatgacaatgctgagaaatgacaatgttgagtaatgacgatgttgagtaa
16932752
T
Q
192
tgaagaatccatgatgttga------ttaatgatcacgtaaataatgagtctgacaaatgaaattatgttgt
257
Q
||||||| |||||||||||| || ||||| |||||||| |||||||| ||| |||||||||||||||
T
16932753
tgaagaaaccatgatgttgaataatgttgatgatgacgtaaatgatgagtctaacagatgaaattatgttgt
16932824
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 16932572 - 16932637
Alignment:
Q
146
acaatgttgaataatgacgatgttgagtggcgacgatgtttagtaatgaagaatccatgatgttga
211
Q
|||||||||| |||||| ||||||||| |||||||| |||||||||||| ||||||||||||
T
16932572
acaatgttgagaaatgacaatgttgagtaatgacgatgtggagtaatgaagaaaccatgatgttga
16932637
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 16932574 - 16932615
Alignment:
Q
132
aatgttgagtaatgacaatgttgaataatgacgatgttgagt
173
Q
||||||||| |||||||||||||| |||||||||||| ||||
T
16932574
aatgttgagaaatgacaatgttgagtaatgacgatgtggagt
16932615
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 25582728 - 25582831
Alignment:
Q
66
gttgccgttagaattaagtacgtaggaaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacga
165
Q
||||||||||| || |||| ||||| ||||||||||||| | | ||||||| | ||||||||||| ||||||||| |||||||||||||| |||| || |
T
25582728
gttgccgttagtatgaagtgcgtagtaaataaggggagccaatattgagtgcaagttttaatgac-aatgttgagaaatgacaatgttgagtaataacaa
25582826
T
Q
166
tgttg
170
Q
|||||
T
25582827
tgttg
25582831
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 25582860 - 25582934
Alignment:
Q
205
atgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgtaattgggagctgttgatgatgt
279
Q
||||||||||||||| |||||||| |||||||||||| |||||||| ||||||| || ||| | ||||||||||
T
25582860
atgttgattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgtagttatgagttattgatgatgt
25582934
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 9694430 - 9694535
Alignment:
Q
66
gttgccgttagaattaagtacgtaggaaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacga
165
Q
|||||||||||||| |||| ||||| ||| ||||||||| | |||||||||| |||||||| | ||||||| || ||||| |||||||| |||| || |
T
9694430
gttgccgttagaatgaagtgcgtagtaaacaaggggagccaatgttgagtgtgagttttaat-aaaaatgttaagaaatgaaaatgttgagtaataacaa
9694528
T
Q
166
tgttgag
172
Q
|||||||
T
9694529
tgttgag
9694535
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 9694528 - 9694626
Alignment:
Q
181
atgtttagtaatgaagaatccatgatgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgtaattgggagctgttgatgatgt
279
Q
||||| || ||||||||| ||| |||| ||||||||| |||||||| |||||||||||| |||||||| ||||||| || ||| | ||||||||||
T
9694528
atgttgagcaatgaagaaatcataatgtacattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgtagttatgagttattgatgatgt
9694626
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 13560807 - 13560912
Alignment:
Q
66
gttgccgttagaattaagtacgtaggaaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacga
165
Q
|||||||||||||| |||| ||||| ||| ||||||||| | |||||||||| |||||||| | ||||||| || ||||| |||||||| |||| || |
T
13560807
gttgccgttagaatgaagtgcgtagtaaacaaggggagccaatgttgagtgtgagttttaat-aaaaatgttaagaaatgaaaatgttgagtaataacaa
13560905
T
Q
166
tgttgag
172
Q
|||||||
T
13560906
tgttgag
13560912
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 13560905 - 13561003
Alignment:
Q
181
atgtttagtaatgaagaatccatgatgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgtaattgggagctgttgatgatgt
279
Q
||||| || ||||||||| ||| |||| ||||||||| |||||||| |||||||||||| |||||||| ||||||| || ||| | ||||||||||
T
13560905
atgttgagcaatgaagaaatcataatgtacattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgtagttatgagttattgatgatgt
13561003
T
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Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 20947165 - 20947091
Alignment:
Q
205
atgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgtaattgggagctgttgatgatgt
279
Q
||||||||||||||| |||||||| |||||||||||| |||||||| ||||||| || ||| | ||||||||||
T
20947165
atgttgattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgtagttatgagttattgatgatgt
20947091
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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