View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_high_5 (Length: 486)
Name: NF0151_1D_high_5
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 839042 - 838704
Alignment:
| Q |
11 |
tagtttacgatttgattgaagaaaatttagtaatccaagtactaaattgtattaaatcgatgaaacatagctatcaaataaacacttttctgtacaatgt |
110 |
Q |
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| T |
839042 |
tagtttacgatttgattgaagaaaatttagtaatccaagtactaaattgtattaaatcgatgaaacatagctatcaaataaacacttttatgtacaatgt |
838943 |
T |
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| Q |
111 |
ttttattacataacatttgataattgtgttggctaggctcattgtgagatgcagtaacaaaaagaagtgtggagatcatggcattgtaaaatattataga |
210 |
Q |
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| T |
838942 |
ttttattacataacatttgataattgtgttggctaggctcattgtgagatgcagtaacaaaaagaagtgtggag---atggcattgtaaaatattataga |
838846 |
T |
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| Q |
211 |
taacagataataaaaaatcaatcattcatacactacataatttccaaataatatgtggaagagaaactcactttt-atgagccaaaaccatactttccac |
309 |
Q |
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| T |
838845 |
taacagataataaaaaatcaatcattcatacactacataatttccaaataatatgtggaagagaaactcacttttaataagccaaaaccatactttccac |
838746 |
T |
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| Q |
310 |
tatattgtatctgcagttatagataaatgcctttaggtcatc |
351 |
Q |
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| T |
838745 |
tatattgtatctgcagttatagataaatgcctttaggtcatc |
838704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 407 - 465
Target Start/End: Complemental strand, 838661 - 838603
Alignment:
| Q |
407 |
caatgttcgtagcatgaagagaaactccgataactaattttaattaaatttatccaaga |
465 |
Q |
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| T |
838661 |
caatgttcgtagcatgaagagaaactccgataactaattttaattaaatttatccaaga |
838603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 1110421 - 1110508
Alignment:
| Q |
71 |
tgaaacatagctatcaaataaacacttttctgtacaatgtttttattacataacatttgataattgtgttggctaggctcattgtgagat |
160 |
Q |
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| T |
1110421 |
tgaaacatagctatcaaataaacactgttctgtacaatagtt--attgaataacacttgttaattgtgatggctaggctcattgtgagat |
1110508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 1110513 - 1110554
Alignment:
| Q |
217 |
ataataaaaaatcaatcattcatacactacataatttccaaa |
258 |
Q |
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| T |
1110513 |
ataataaaaaatcaatcataaatacactacataatttccaaa |
1110554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 10468371 - 10468323
Alignment:
| Q |
259 |
taatatgtggaagagaaactcacttt-tatgagccaaaaccatactttc |
306 |
Q |
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| T |
10468371 |
taatatgtggaagagaaactcactttcaatgagtcaaaaccaaactttc |
10468323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 8e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 53 - 259
Target Start/End: Complemental strand, 25377966 - 25377765
Alignment:
| Q |
53 |
taaattgtattaaatcgatgaaacatagctatcaaataaacacttttctgtacaatgtttttattacataacatttgataattgtgttggctaggctcat |
152 |
Q |
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| T |
25377966 |
taaattgtattaaatcgctgaagaatatctatcaaataaacactgtactgtacaatattt--attgaataacacttgttaattgtgatggctaggctcat |
25377869 |
T |
|
| Q |
153 |
tgtgagatgcagtaacaaaaagaagtgtggagatcatggcattgtaaaatattatagataacagataataaaaaatcaatcattcatacactacataatt |
252 |
Q |
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| T |
25377868 |
tctgagatgcaataacaaaatgaagtgtggagat---ggcattgtaaaatattatagataatagatgataaaaaatcaatcataaatacactacataatt |
25377772 |
T |
|
| Q |
253 |
tccaaat |
259 |
Q |
| |
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||||||| |
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| T |
25377771 |
tccaaat |
25377765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 259 - 348
Target Start/End: Complemental strand, 25377352 - 25377262
Alignment:
| Q |
259 |
taatatgtggaagagaaactcactttta-tgagccaaaaccatactttccactatattgtatctgcagttatagataaatgcctttaggtc |
348 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25377352 |
taatatgtggaagagaaactcacttttaatgagtcaaaaccatactttccactatattgtttctgcagttatagataaatgcctttaggtc |
25377262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 352 - 480
Target Start/End: Complemental strand, 25377228 - 25377100
Alignment:
| Q |
352 |
cttagaaagacccaatgggattaaattcaaccacgcaaagatacacgtcactccacaatgttcgtagcatgaagagaaactccgataactaattttaatt |
451 |
Q |
| |
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||||||||||||||||||||| ||||||||||| | ||||||| | ||| ||||| | || ||||||||||||||||||||||||||||||||||| | |
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| T |
25377228 |
cttagaaagacccaatgggatcaaattcaaccatggaaagatagaactcattccacgaaatttgtagcatgaagagaaactccgataactaattttaaat |
25377129 |
T |
|
| Q |
452 |
aaatttatccaagactcttgaactccaaa |
480 |
Q |
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|| | ||||||||||||||||||||||| |
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| T |
25377128 |
aattgaatccaagactcttgaactccaaa |
25377100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 50645485 - 50645529
Alignment:
| Q |
436 |
ataactaattttaattaaatttatccaagactcttgaactccaaa |
480 |
Q |
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| T |
50645485 |
ataactaattttaaataattgaatccaagactcttgaactccaaa |
50645529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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