View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0151_1D_low_1 (Length: 739)
Name: NF0151_1D_low_1
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 615; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 23 - 713
Target Start/End: Complemental strand, 35360805 - 35360124
Alignment:
| Q |
23 |
aacccatttgtcacaattggttaatttgtgagaatattcttcagaggttggaaaccatgacgaatacttgcttcccaaactttctcaatgctaagtatag |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35360805 |
aacccatttgtcacacttggttaatttgtgagaatattcttcagaggttggaaaccatgacgaatacttgcttcccaaactttctcaatgctaagtatag |
35360706 |
T |
|
| Q |
123 |
tgtcaccacattcatgaacattccatccttctaaggcatgaattattccagcaatacgccatgcactcataactcttcttggaagccaattctgttacat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35360705 |
tgtcaccacattcatgaacattccatccttctaaggcatgaattattccagcaatacgccatgcactcataactcttcttggaagccaattctgttacat |
35360606 |
T |
|
| Q |
223 |
aaatacattcattaatcagtgtagtaacattttaaaattttaatgtatattattataatagtatactgaaggatataaaaatatgctatttacacacctc |
322 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
35360605 |
aaatacattaattaat----gtagtaacattttaaaattttaatgtatgttattataatagtataccgaaggatataaaaatatgctaattacacacctc |
35360510 |
T |
|
| Q |
323 |
acaagagtgtgaattcatgaatgtagtaggagtaatcattgctggtgtatagtggtagaagcaatcttttcgcattttctttggaggaaaatgagaaaat |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35360509 |
acaagagtgtgaattcatgaatgtagtaggagtaatcattgctggtgtatagtggtagaagcaatcttttcgcattttctttggaggaaaatgagaaaat |
35360410 |
T |
|
| Q |
423 |
ggtatgaacaatgatcctttcggtgcttccatttgctcatattcatcccattcatccccaactaaccatatctattagacgagatnnnnnnnnttaaacc |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
35360409 |
ggtatgaacaatgatcctttcggtgcttccatttgctcatattcatcccattcatccccaactaaccatatctattagacaagataaaaa-----aaacc |
35360315 |
T |
|
| Q |
523 |
atgtttttgttagactcataatatgataaaataacttattaatcagttattaaatgaattttttagcattatatatgttgtgcaacttaccaaaaaatat |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35360314 |
atgtttttgttagactcataatatgataaaataacttattaatcagttattaaatgaattttttagcattatatatgttgtgcaacttaccaaaaaatat |
35360215 |
T |
|
| Q |
623 |
tgtagaaatatgttgcaacaataacaaagttaaacaatattttgccactaaaaaacctaatagtgtgaatgtgtgtgcatgtgggttttgt |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35360214 |
tgtagaaatatgttgcaacaataacaaagttaaacaatattttgccactaaaaaacctaatagtgtgaatgtgtgtgcatgtgggttttgt |
35360124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 23 - 495
Target Start/End: Complemental strand, 35373174 - 35372706
Alignment:
| Q |
23 |
aacccatttgtcacaattggttaatttgtgagaatattcttcagaggttggaaaccatgacgaatacttgcttcccaaactttctcaatgctaagtatag |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
35373174 |
aacccatttgtcacacttggttaatttgtgaggatattcttcagaggttggaaaccatgacgaatacttgcttcccaaactttctcagtgctaagtatag |
35373075 |
T |
|
| Q |
123 |
tgtcaccacattcatgaacattccatccttctaaggcatgaattattccagcaatacgccatgcactcataactcttcttggaagccaattctgttacat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35373074 |
tgtcaccacattcatgaacattccatccttctaaggcatgaattattccagcaatacgccatgcactcataactcttcttggaagccaattctgttacat |
35372975 |
T |
|
| Q |
223 |
aaatacattcattaatcagtgtagtaacattttaaaattttaatgtatattattataatagtatactgaaggatataaaaatatgctatttacacacctc |
322 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35372974 |
aaatacattaattaat----gtagtaacattttaaaattttaatgtatgttattataatagtatactgaaggatataaaaatatgctatttacacacctc |
35372879 |
T |
|
| Q |
323 |
acaagagtgtgaattcatgaatgtagtaggagtaatcattgctggtgtatagtggtagaagcaatcttttcgcattttctttggaggaaaatgagaaaat |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35372878 |
acaagagtgtgaattcatgaatgtagtaggagtaatcattgctggtgtatagtggtagaagcaatcttttcgcattttctttggagggaaatgagaaaat |
35372779 |
T |
|
| Q |
423 |
ggtatgaacaatgatcctttcggtgcttccatttgctcatattcatcccattcatccccaactaaccatatct |
495 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
35372778 |
ggtatgaataatgatcctttcggtgcttccatttgctcatattcatcccattcatctccaactagccatatct |
35372706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 60 - 500
Target Start/End: Complemental strand, 35383140 - 35382704
Alignment:
| Q |
60 |
tcttcagaggttggaaaccatgacgaatacttgcttcccaaactttctcaatgctaagtatagtgtcaccacattcatgaacattccatccttctaaggc |
159 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35383140 |
tctttagaggttggaaaccatgacgaatacttgcttcccaaactttctcagtgctaagtatagtgtcaccacattcatgaacattccatccttctaaggc |
35383041 |
T |
|
| Q |
160 |
atgaattattccagcaatacgccatgcactcataactcttcttggaagccaattctgttacataaatacattcattaatcagtgtagtaacattttaaaa |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
35383040 |
atgaattattccagcaatacgccatgcactcataactcttcttggaagccaattctgttacataaatacattaattaat----gtagtaacattttaaaa |
35382945 |
T |
|
| Q |
260 |
ttttaatgtatattattataatagtatactgaaggatataaaaatatgctatttacacacctcacaagagtgtgaattcatgaatgtagtaggagtaatc |
359 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
35382944 |
ttttaatgtattttattataatagtataccgaaggatataaaaatatgctatttacacacctcacaagagtgtgaattcatgaatgtagcaggagttatc |
35382845 |
T |
|
| Q |
360 |
attgctggtgtatagtggtagaagcaatcttttcgcattttctttggaggaaaatgagaaaatggtatgaacaatgatcctttcggtgcttccatttgct |
459 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||| || ||||| |
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|
| T |
35382844 |
attgctggtgtaaagtggtagaagcaacattttctcattttctttggagggaaatgagaaaatggtatgaataatgacccttctggtgctttcaattgct |
35382745 |
T |
|
| Q |
460 |
catattcatcccattcatccccaactaaccatatctattag |
500 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35382744 |
catcttcatcccattcatccccaactaaccatatctgttag |
35382704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 3e-53; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 351 - 501
Target Start/End: Complemental strand, 19688762 - 19688612
Alignment:
| Q |
351 |
ggagtaatcattgctggtgtatagtggtagaagcaatcttttcgcattttctttggaggaaaatgagaaaatggtatgaacaatgatcctttcggtgctt |
450 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |
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|
| T |
19688762 |
ggagttatcattgctggtgtatagtggtagaagcaaccttttcgcattttctttggaggaaaatgagaaaaaggtatgaacaatgatccttctgatgctt |
19688663 |
T |
|
| Q |
451 |
ccatttgctcatattcatcccattcatccccaactaaccatatctattaga |
501 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
19688662 |
gcatttgctcatcttcatcccaatcatctccaactaaccatatctgttaga |
19688612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 19691260 - 19691114
Alignment:
| Q |
72 |
ggaaaccatgacgaatacttgcttcccaaactttctcaatgctaagtatagtgtcaccacattcatgaacattccatccttctaaggcatgaattattcc |
171 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| || || |||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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|
| T |
19691260 |
ggaaaccatggcgaatacttgcttcccatactttctcaatgtcaaatacagtgtcaccacactcatgaacattccatctttctaaggcatgaattattcc |
19691161 |
T |
|
| Q |
172 |
agcaatacgccatgcactcataactcttcttggaagccaattctgtt |
218 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
19691160 |
agcaatacgccaagcactcatgactcttcttggaagccaattctgtt |
19691114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 19701845 - 19701699
Alignment:
| Q |
72 |
ggaaaccatgacgaatacttgcttcccaaactttctcaatgctaagtatagtgtcaccacattcatgaacattccatccttctaaggcatgaattattcc |
171 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| || || |||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19701845 |
ggaaaccatggcgaatacttgcttcccatactttctcaatgtcaaatacagtgtcaccacactcatgaacattccatctttctaaggcatgaattattcc |
19701746 |
T |
|
| Q |
172 |
agcaatacgccatgcactcataactcttcttggaagccaattctgtt |
218 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
19701745 |
agcaatacgccaagcactcatgactcttcttggaagccaattctgtt |
19701699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 19625613 - 19625755
Alignment:
| Q |
75 |
aaccatgacgaatacttgcttcccaaactttctcaatgctaagtatagtgtcaccacattcatgaacattccatccttctaaggcatgaattattccagc |
174 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||| || |||||| ||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
19625613 |
aaccatgacgaatacttgcttcccatactttctcaatgttaaatacagtgtcgccacactcatgagcatcccatccttctaaggcatgaattattccagc |
19625712 |
T |
|
| Q |
175 |
aatacgccatgcactcataactcttcttggaagccaattctgt |
217 |
Q |
| |
|
||| ||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
19625713 |
aatgcgccaagcactcatgactcttcttggaagccagttctgt |
19625755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 344 - 502
Target Start/End: Original strand, 19626697 - 19626855
Alignment:
| Q |
344 |
tgtagtaggagtaatcattgctggtgtatagtggtagaagcaatcttttcgcattttctttggaggaaaatgagaaaatggtatgaacaatgatcctttc |
443 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19626697 |
tgtagtaggagtgatcattgctggtgtatagtggtacaggcaacctttttgcattttctttggaggaaaatgagaaaaaggtatgaacaatgatccttct |
19626796 |
T |
|
| Q |
444 |
ggtgcttccatttgctcatattcatcccattcatccccaactaaccatatctattagac |
502 |
Q |
| |
|
| ||||| ||||||||||| ||||||||| || || |||||||||||| ||| |||||| |
|
|
| T |
19626797 |
gatgcttgcatttgctcatcttcatcccagtcctctccaactaaccatgtctgttagac |
19626855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 2252990 - 2253085
Alignment:
| Q |
128 |
ccacattcatgaacattccatccttctaaggcatgaattattccagcaatacgccatgcactcataactcttcttggaagccaattctgttacata |
223 |
Q |
| |
|
|||||||||||||| | ||| ||||| || || || | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
2252990 |
ccacattcatgaacgtcccaaccttccaaagcgtgcaatattccagcaatacgccatgcactcatgactcttcttggaagccaattctgttgcata |
2253085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 378 - 448
Target Start/End: Original strand, 2253510 - 2253580
Alignment:
| Q |
378 |
tagaagcaatcttttcgcattttctttggaggaaaatgagaaaatggtatgaacaatgatcctttcggtgc |
448 |
Q |
| |
|
||||||||||||||||| | |||||||||||| || || |||||||||| ||||||||||||||| ||||| |
|
|
| T |
2253510 |
tagaagcaatcttttcgaaatttctttggagggaattgggaaaatggtacgaacaatgatccttttggtgc |
2253580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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