View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_low_10 (Length: 450)
Name: NF0151_1D_low_10
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 134 - 387
Target Start/End: Complemental strand, 52029420 - 52029167
Alignment:
| Q |
134 |
tcatgtgcagtggtggattcaataggaagttaggaatggaagctgtagttcaaggtgatgctgatttggtatcatttggtcgtcttttcatctctaatcc |
233 |
Q |
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| T |
52029420 |
tcatgtgcagtggtggattcaataggaagttaggaatggaagctgtagttcaaggtgatgctgatttggtatcatttggtcgtcttttcatctctaatcc |
52029321 |
T |
|
| Q |
234 |
agatttggttttaaggtttaagcttaatgctcctctgaacaagtataacaggaagacattttacacacaggatcctgttattggctacactgattatcct |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52029320 |
agatttggttttaaggtttaagcttaatgctcctctgaacaagtataacaggaagacattttacacacaggatcctgttattggctacactgattatcct |
52029221 |
T |
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| Q |
334 |
ttcctcaccaaaggaaatcagactcaagagcaaaatgcacgcctttgattgttg |
387 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52029220 |
ttcctcaccaaaggaaatcagactcaagagctaaatgcacgcctttgattgttg |
52029167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 1071834 - 1071871
Alignment:
| Q |
260 |
atgctcctctgaacaagtataacaggaagacattttac |
297 |
Q |
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| T |
1071834 |
atgctcctctaaacaagtataacagggagacattttac |
1071871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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