View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0151_1D_low_11 (Length: 446)

Name: NF0151_1D_low_11
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0151_1D_low_11
NF0151_1D_low_11
[»] chr5 (2 HSPs)
chr5 (84-425)||(38815437-38815781)
chr5 (1-88)||(38815928-38816015)
[»] chr7 (2 HSPs)
chr7 (123-220)||(39079876-39079973)
chr7 (115-172)||(21048692-21048749)
[»] chr1 (3 HSPs)
chr1 (123-220)||(19810946-19811043)
chr1 (14-62)||(33879869-33879917)
chr1 (14-62)||(33964338-33964386)
[»] chr8 (1 HSPs)
chr8 (166-220)||(25971173-25971227)
[»] chr6 (2 HSPs)
chr6 (125-171)||(2115530-2115576)
chr6 (165-218)||(18286713-18286766)
[»] chr2 (3 HSPs)
chr2 (141-187)||(33455859-33455905)
chr2 (1-62)||(5424847-5424908)
chr2 (132-177)||(7252252-7252297)
[»] chr3 (2 HSPs)
chr3 (132-177)||(1348868-1348913)
chr3 (6-38)||(4255467-4255499)
[»] scaffold1034 (1 HSPs)
scaffold1034 (123-198)||(819-895)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 84 - 425
Target Start/End: Complemental strand, 38815781 - 38815437
Alignment:
Q  84 taagtagtagtgcttgtaagtttggacagtgcgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815781 taagtagtagtgcttgtaagtttggacagtgcgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtc 38815682  T
Q  184 tatcctagatctgttgttggactgcccgcattgtccatgcccctagcccaatttatgccaggttgtgaggca--gtgttggaaattttgccttgattgtg 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  38815681 tatcctagatctgttgttggactgcccgcattgtccatgcccctagtccaatttatgccaggttgtgaggcagggtgttggaaattttgccttgattgtg 38815582  T
Q  282 gtctgcccctagccatcttaaatttggcttttaaatttccttcattgcagcttcgagcaccttaattttgctgggtgtgagaggctgggttagtcctaca 381  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815581 gtcttcccctagccatcttaaatttggcttttaaatttccttcattgcagcttcgagcaccttaattttgctgggtgtgagaggctgggttagtcctaca 38815482  T
Q  382 cagcctagagatctaaatagccgtgaagggcctc-ttgtgtggtg 425  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  38815481 cagcctagagatctaaatagccgtgaagggcctctttgtgtggtg 38815437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 38816015 - 38815928
Alignment:
Q  1 ttccctcattgtcgcctccaacaccttcattgtgttggacttgagaggtcgggtttagtcccgcatgaccaagagacatggcctaagt 88  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816015 ttccctcattgtcgcttccaacaccttcattgtgttggacttgagaggtcgggtttagtcccgcatgaccaagagacatggcctaagt 38815928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 39079973 - 39079876
Alignment:
Q  123 acaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 220  Q
    |||||||| ||||||| |||| | |||| | ||||||||| | |||||||  ||| ||| ||||||||||||||| ||||| || || ||||||||||    
T  39079973 acaagccggttttgtaaggtttagttaggcccaacccaaattttaagatggcatcagagcctatcctagatctgtcgttgggcttcctgcattgtcca 39079876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 21048749 - 21048692
Alignment:
Q  115 cgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatg 172  Q
    ||||||| ||||||| ||||| || |||||| |||| ||||||||||| |||||||||    
T  21048749 cgcaccttacaagccaattttataaggttgagttaggctcaacccaaattctaagatg 21048692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 19811043 - 19810946
Alignment:
Q  123 acaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 220  Q
    |||||||| ||||||| |||||| |||| |  |||||||| | ||||||| |||| ||| |||||||||||||||||  || || ||||||| |||||    
T  19811043 acaagccggttttgtaaggttgacttaggccgaacccaaattttaagatggtatcagagactatcctagatctgttgcagggcttcccgcatcgtcca 19810946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 33879917 - 33879869
Alignment:
Q  14 gcctccaacaccttcattgtgttggacttgagaggtcgggtttagtccc 62  Q
    |||||||||||||||||||||||||  ||||||||  || |||||||||    
T  33879917 gcctccaacaccttcattgtgttggctttgagagggtggatttagtccc 33879869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 33964338 - 33964386
Alignment:
Q  14 gcctccaacaccttcattgtgttggacttgagaggtcgggtttagtccc 62  Q
    |||||||||||||||||||||||||  ||||||||  || |||||||||    
T  33964338 gcctccaacaccttcattgtgttggctttgagagggtggatttagtccc 33964386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 25971173 - 25971227
Alignment:
Q  166 taagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 220  Q
    |||||||  ||| ||| |||||||||||||||||||||||| ||||||| |||||    
T  25971173 taagatggaatcagagcctatcctagatctgttgttggacttcccgcatcgtcca 25971227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 2115530 - 2115576
Alignment:
Q  125 aagccgattttgtagggttgaattagactcaacccaaactctaagat 171  Q
    |||||| |||||||||||| |||||||||||||||||| | ||||||    
T  2115530 aagccggttttgtagggttcaattagactcaacccaaattttaagat 2115576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 18286713 - 18286766
Alignment:
Q  165 ctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtc 218  Q
    ||||||||||||| ||| ||||| |||||||||||| || || |||||||||||    
T  18286713 ctaagatgatatcagagcctatcgtagatctgttgtcgggcttcccgcattgtc 18286766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 33455859 - 33455905
Alignment:
Q  141 gttgaattagactcaacccaaactctaagatgatatcggagtctatc 187  Q
    ||||| |||||||||||||||| ||||||||| |||| |||||||||    
T  33455859 gttgagttagactcaacccaaattctaagatggtatcagagtctatc 33455905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5424908 - 5424847
Alignment:
Q  1 ttccctcattgtcgcctccaacaccttcattgtgttggacttgagaggtcgggtttagtccc 62  Q
    |||| ||||||  ||||||||||||||||||||||||   ||||||||  ||||||||||||    
T  5424908 ttccttcattgcagcctccaacaccttcattgtgttgcctttgagagggtgggtttagtccc 5424847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 7252252 - 7252297
Alignment:
Q  132 ttttgtagggttgaattagactcaacccaaactctaagatgatatc 177  Q
    |||||||||||||| |||| ||||||||||| ||||||||| ||||    
T  7252252 ttttgtagggttgagttaggctcaacccaaattctaagatggtatc 7252297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 1348913 - 1348868
Alignment:
Q  132 ttttgtagggttgaattagactcaacccaaactctaagatgatatc 177  Q
    ||||||| |||||| |||||||||||||||| | ||||||||||||    
T  1348913 ttttgtatggttgagttagactcaacccaaattttaagatgatatc 1348868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 4255467 - 4255499
Alignment:
Q  6 tcattgtcgcctccaacaccttcattgtgttgg 38  Q
    ||||||| |||||||||||||||||||||||||    
T  4255467 tcattgtagcctccaacaccttcattgtgttgg 4255499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1034 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 819 - 895
Alignment:
Q  123 acaagccgattttgta-gggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgtt 198  Q
    |||||| ||||||||| |||||||||||| |  ||| |||| |||||||||||||| ||||||| |  |||||||||    
T  819 acaagctgattttgtaagggttgaattaggcctaactcaaattctaagatgatatcagagtctaactaagatctgtt 895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1169 times since January 2019
Visitors: 1527