View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_low_14 (Length: 412)
Name: NF0151_1D_low_14
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 33599304 - 33599703
Alignment:
| Q |
1 |
aggaaaatacttgtgttcggatagcttgttcataaagggagttacatcagcctccaaagctgacatgtgtctaaatggatttttagccttgcaccaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33599304 |
aggaaaatacttgtgttcggatagcttgttcataaagggagttacatcagcctccaaagctgacatgtgtctaaatggatttttagccctgcaccaacaa |
33599403 |
T |
|
| Q |
101 |
tatgtatcaaacataaaaggactt--cacaactaagagaaagagtagctattggttcagctatatcatcaagcctacgcagttttggcaaatgattttac |
198 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33599404 |
tatgtatcaaacataaaagggcttttcacaactaagagaaagagtagccattggttcagctatatcatcaagcctacgcagttttggcaaatgattttac |
33599503 |
T |
|
| Q |
199 |
agatagaacaatatgcaagacaatataataataatagctcagaaagctattgagatcatcatgttttggaatgttgctcatgaaaatctcaaccaacatt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33599504 |
agatagaacaatatgcaagacaatataataataatagctcagaaagctattgagatcatcatgttttggaatgttactcatgaaaatctcaaccaacatt |
33599603 |
T |
|
| Q |
299 |
agccacacctgtgttatgccaaaacacacctaatagagacataaaaactagccnnnnnnngcacctaacagagacttaaaacaagtgctcctgatgtcca |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
33599604 |
agccacacctgtgttatgccaaaacacacctaatagagacataaaaactagccaaaaaaagcacctaacagagacttaaaacaagtgctcctgctgtcca |
33599703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 44063173 - 44063090
Alignment:
| Q |
136 |
gaaagagtagctattggttcagctatatcatcaagcctacgcagttttggcaaatgattttacagatagaacaatatgcaagacaata |
223 |
Q |
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||||||| |||||||||||||||| |||||||||| || ||||| ||||||||||| ||||||||||||||||| ||||||||| |
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| T |
44063173 |
gaaagagcagctattggttcagctgtatcatcaagttta----gtttttgcaaatgatttcacagatagaacaatatggaagacaata |
44063090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 44063071 - 44063008
Alignment:
| Q |
223 |
ataataataatagctcagaaagctattgagatcatcatgttttggaatgttgctcatgaaaatc |
286 |
Q |
| |
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||||||| ||||||| |||||||||| | | |||||||||| |||||||||||||||||||||| |
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| T |
44063071 |
ataataacaatagctaagaaagctatcgggttcatcatgttctggaatgttgctcatgaaaatc |
44063008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 46723348 - 46723425
Alignment:
| Q |
132 |
aagagaaagagtagctattggttcagctatatcatcaagcctacgcagttttggcaaatgattttacagatagaacaa |
209 |
Q |
| |
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||||||||||| | ||||||||||| |||||||| ||||||| | | |||||| ||||||| |||||| ||||||| |
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| T |
46723348 |
aagagaaagagcggttattggttcagttatatcattaagcctatgtaattttggtaaatgatagtacagacagaacaa |
46723425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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