View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0151_1D_low_15 (Length: 411)
Name: NF0151_1D_low_15
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_15 |
 | |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0295 (1 HSPs) |
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| [»] scaffold0106 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 272 - 411
Target Start/End: Complemental strand, 44551678 - 44551539
Alignment:
| Q |
272 |
gggggccctctctccgcttcttttttgcctcgcagaggaagtgttaagtcgcactctttagatggaacgagtttctaattctttgcagccaatgttctat |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44551678 |
gggggccctctctccgcttcttttttgcctcgcagaggaagtgttaagtcgcactcttgagatggaacgagtttctaattctttgcagccaatgttctat |
44551579 |
T |
|
| Q |
372 |
tgtagaggtatctcacttccaacttatatcctttatgcag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
44551578 |
tgtagaggtatctcacttccaacttatatcatttatgcag |
44551539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 20852231 - 20852364
Alignment:
| Q |
10 |
tgtatgcgtgtcatttctccacagcagcggggatttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttgttaacaa |
109 |
Q |
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|||||||| |||||||||| || || ||||| |||||||| ||||| ||||| || || ||||| ||| |||||| ||||||||| |||||||| |||| |
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| T |
20852231 |
tgtatgcgaatcatttctcctcaacaacggggttttgttcgagaccgcaatatctcggattgtgttattcttgcttttgaggtgatcaatttgttgacaa |
20852330 |
T |
|
| Q |
110 |
agaagcaatttggtggtaacattgccattaaggt |
143 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
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|
| T |
20852331 |
agaagcaatttggtggtaatattgccattaaggt |
20852364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 20493847 - 20493950
Alignment:
| Q |
43 |
tttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttgttaacaaagaagcaatttggtggtaacattgccattaagg |
142 |
Q |
| |
|
|||||| |||||||||| ||||| || ||||| || || ||||| ||||| ||||||||||| ||||||||| ||||||||||| |||| |||| || |
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| T |
20493847 |
tttgtttgtgaccgtaacatttctgattgtgtgataatagcttcagaggtaattaatttgttgccaaagaagcgctttggtggtaatgttgctattatgg |
20493946 |
T |
|
| Q |
143 |
ttga |
146 |
Q |
| |
|
|||| |
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|
| T |
20493947 |
ttga |
20493950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 20852483 - 20852560
Alignment:
| Q |
209 |
ctctctattttggtgaatggcaactatgtaggctatttctcttgttcgagaggtgtgcgccaagggggccctctctcc |
286 |
Q |
| |
|
||||||||||||||||||||||| || || || ||||||||| | ||||| ||||||||||| | |||||||||| |
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|
| T |
20852483 |
ctctctattttggtgaatggcaaagtcgtgggttacttctcttgtactagaggcgtgcgccaaggagaccctctctcc |
20852560 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 22023963 - 22023827
Alignment:
| Q |
7 |
atttgtatgcgtgtcatttctccacagcagcggggatttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttgttaa |
106 |
Q |
| |
|
||||||||||| |||| ||||| || || |||| |||||||| ||||| ||||| || || ||||| |||||||||||||||||||| |||||||| | |
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| T |
22023963 |
atttgtatgcgaatcatctctcctcaacaaaggggttttgttcgagaccgcaatatctcggattgtgttattattgcttctgaggtgatcaatttgttga |
22023864 |
T |
|
| Q |
107 |
caaagaagcaatttggtggtaacattgccattaaggt |
143 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| |
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|
| T |
22023863 |
caaagaagcaatttggtggaaatattgccattaaggt |
22023827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 32133957 - 32133815
Alignment:
| Q |
1 |
gctctaatttgtatgcgtgtcatttctccacagcagcggggatttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatt |
100 |
Q |
| |
|
||||| ||||||||| || | || || ||||| || |||||||||| || ||||| || |||||||| ||||| ||||||||||| |||||||| || | |
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| T |
32133957 |
gctcttatttgtatgtgtataatctcgccacaacaaaggggatttgtacgcgaccgcaacatttcagattgtgtgattattgcttcggaggtgatcaact |
32133858 |
T |
|
| Q |
101 |
tgttaacaaagaagcaatttggtggtaacattgccattaaggt |
143 |
Q |
| |
|
|||| ||||||| |||| |||||||||||| ||||| ||||| |
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|
| T |
32133857 |
cgttatcaaagaaacaatatggtggtaacatagccatcaaggt |
32133815 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 25973677 - 25973607
Alignment:
| Q |
32 |
agcagcggggatttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttg |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| | ||| |||||| |
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|
| T |
25973677 |
agcaacggggatttgttcgtgaccgtaacatttctgactgtgtaattattgcatctgaagcgatcaatttg |
25973607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 22023708 - 22023631
Alignment:
| Q |
209 |
ctctctattttggtgaatggcaactatgtaggctatttctcttgttcgagaggtgtgcgccaagggggccctctctcc |
286 |
Q |
| |
|
||||||||||||||||||||||| ||| || || ||||| ||| | ||||| ||||||||||||| |||||||||| |
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|
| T |
22023708 |
ctctctattttggtgaatggcaaggctgtgggttacttctcctgtactagaggcgtgcgccaaggggaccctctctcc |
22023631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 12674963 - 12674863
Alignment:
| Q |
43 |
tttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttgttaacaaagaagcaatttggtggtaacattgccattaagg |
142 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| ||||||||||| ||| ||||||| | |||| | |||||||||||| |||| |||||||| || |||| |
|
|
| T |
12674963 |
tttgtccgtgaccgtaatattgcagactgtgttattattgcttcggagatgattaactcgttaccgaagaagcaattttgtggaaacattgcaatcaagg |
12674864 |
T |
|
| Q |
143 |
t |
143 |
Q |
| |
|
| |
|
|
| T |
12674863 |
t |
12674863 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 20939478 - 20939408
Alignment:
| Q |
32 |
agcagcggggatttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttg |
102 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||||| ||||||||||||||||||||||| | ||| |||||| |
|
|
| T |
20939478 |
agcaacggggatttgttcgtgaccgttacatttctgactgtgtaattattgcttctgaagcgatcaatttg |
20939408 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 12685052 - 12684952
Alignment:
| Q |
43 |
tttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttgttaacaaagaagcaatttggtggtaacattgccattaagg |
142 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||| |||||| |||| ||| ||||||| | |||| | |||||||||||| |||| |||||||| || |||| |
|
|
| T |
12685052 |
tttgtccgtgaccgtaatattgcagactatgttattatttcttcggagatgattaactcgttaccgaagaagcaattttgtggaaacattgcaatcaagg |
12684953 |
T |
|
| Q |
143 |
t |
143 |
Q |
| |
|
| |
|
|
| T |
12684952 |
t |
12684952 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 20715 - 20579
Alignment:
| Q |
7 |
atttgtatgcgtgtcatttctccacagcagcggggatttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttgttaa |
106 |
Q |
| |
|
||||| ||||| |||| ||||| |||||| | || ||||| |||||||| || || || |||| | | ||| ||||||| ||||| |||||| |||||| |
|
|
| T |
20715 |
atttgcatgcgcatcatctctcctcagcagagaggctttgtccgtgaccggaaaatctctgactatattattcttgcttcggaggttattaatatgttaa |
20616 |
T |
|
| Q |
107 |
caaagaagcaatttggtggtaacattgccattaaggt |
143 |
Q |
| |
|
| |||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
20615 |
ctaagaagcagtttggtggaaacattgccatcaaggt |
20579 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 16004105 - 16004005
Alignment:
| Q |
43 |
tttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttgttaacaaagaagcaatttggtggtaacattgccattaagg |
142 |
Q |
| |
|
||||| ||||||||||||||| | |||||||| ||||||||||| || ||||||| | |||| | |||||||||||| |||| |||||||| || |||| |
|
|
| T |
16004105 |
tttgtccgtgaccgtaatattgccgactgtgttattattgcttcggaaatgattaactcgttaccgaagaagcaattttgtggaaacattgcaatcaagg |
16004006 |
T |
|
| Q |
143 |
t |
143 |
Q |
| |
|
| |
|
|
| T |
16004005 |
t |
16004005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 16224645 - 16224733
Alignment:
| Q |
43 |
tttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttgttaacaaagaagcaatttggtggtaacat |
131 |
Q |
| |
|
||||||||||||||||| || || || ||||| || |||| |||||||| || |||| | ||||||||||||| |||||||||||||| |
|
|
| T |
16224645 |
tttgttcgtgaccgtaacatctctgaatgtgttatacttgcctctgaggttatcaattcgctaacaaagaagcagtttggtggtaacat |
16224733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 42065051 - 42065187
Alignment:
| Q |
7 |
atttgtatgcgtgtcatttctccacagcagcggggatttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttgttaa |
106 |
Q |
| |
|
|||||||||||| | ||||| || ||| |||| || |||||| | ||||||||||| || || ||| | ||| | ||||| ||||| ||||| |||||| |
|
|
| T |
42065051 |
atttgtatgcgtattatttcccctcagtagcgaggttttgttagagaccgtaatatatctgattgtattattttggcttcggaggtaattaacttgttac |
42065150 |
T |
|
| Q |
107 |
caaagaagcaatttggtggtaacattgccattaaggt |
143 |
Q |
| |
|
|||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
42065151 |
caaagaagcaatttgggggaaacatagccataaaggt |
42065187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 21462200 - 21462257
Alignment:
| Q |
32 |
agcagcggggatttgttcgtgaccgtaatatttcagactgtgtaattattgcttctga |
89 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
21462200 |
agcagcggggttttgttcgagaccgtaatatttctgactgtgtaattatagcatctga |
21462257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 41346524 - 41346472
Alignment:
| Q |
32 |
agcagcggggatttgttcgtgaccgtaatatttcagactgtgtaattattgct |
84 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| || || |||||||||||| |
|
|
| T |
41346524 |
agcaacggggatttgtttgtgaccgtaacatttctgagtgcgtaattattgct |
41346472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0106 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0106
Description:
Target: scaffold0106; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 47580 - 47680
Alignment:
| Q |
43 |
tttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttgttaacaaagaagcaatttggtggtaacattgccattaagg |
142 |
Q |
| |
|
|||||| | ||| |||||||||| |||||||| || | |||||||||| |||||||| ||| |||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
47580 |
tttgttagagactgtaatatttctgactgtgtccttttggcttctgaggcaattaatttattatcaaagaagcaatacggtggcaacattgctattaagg |
47679 |
T |
|
| Q |
143 |
t |
143 |
Q |
| |
|
| |
|
|
| T |
47680 |
t |
47680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 200969 - 200869
Alignment:
| Q |
43 |
tttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgaggtgattaatttgttaacaaagaagcaatttggtggtaacattgccattaagg |
142 |
Q |
| |
|
||||| ||||||||||||||| | |||||||| ||||||||||| || | ||||| | |||| | |||||||||||| |||| |||||||| || |||| |
|
|
| T |
200969 |
tttgtccgtgaccgtaatattgccgactgtgttattattgcttcggaaattattaactcgttaccgaagaagcaattttgtggaaacattgcaatcaagg |
200870 |
T |
|
| Q |
143 |
t |
143 |
Q |
| |
|
| |
|
|
| T |
200869 |
t |
200869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 26194 - 26136
Alignment:
| Q |
32 |
agcagcggggatttgttcgtgaccgtaatatttcagactgtgtaattattgcttctgagg |
91 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||| ||||| || ||||||| |
|
|
| T |
26194 |
agcagcgggg-tttgttcgagaccgtaatatttctgactgtgttattatagcatctgagg |
26136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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