View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0151_1D_low_2 (Length: 707)
Name: NF0151_1D_low_2
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 290 - 699
Target Start/End: Original strand, 15607071 - 15607478
Alignment:
| Q |
290 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacgtttcatatttattaggcattgacactca |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
15607071 |
taatatttactagttaacctttgactttctttgagttat--gcttgaataacatacacatatcatttgtacttttcatatttattaggtattgacactca |
15607168 |
T |
|
| Q |
390 |
tatttatgtttgtcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgttggca |
489 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15607169 |
tatttatgtttatcctgaaagagatgaaactcttatctactatatagtgtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgttggca |
15607268 |
T |
|
| Q |
490 |
ctgaggattttggtacatggtgatatgtgttgtgcagggattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatcca |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15607269 |
ctgaggattttggtacatggtgatatgtgtgatgcagggattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccg |
15607368 |
T |
|
| Q |
590 |
ttattggttcactcaatccaatggtaaaaatcacttaattccagtttatatctcgaattttgttttattctgattctgaacatcgttccttcccaaagcc |
689 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
15607369 |
ttattggttcactcaatccaatggtaaaaatcacttaattccggtttataactcgaattttgttttattctgattctgtacattgttccttcccaaagcc |
15607468 |
T |
|
| Q |
690 |
acttcatatc |
699 |
Q |
| |
|
|||||||||| |
|
|
| T |
15607469 |
acttcatatc |
15607478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 290 - 699
Target Start/End: Original strand, 15638589 - 15638997
Alignment:
| Q |
290 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacgtttcatatttattaggcattgacactca |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
15638589 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacttttcatatttattaggtattgacactca |
15638688 |
T |
|
| Q |
390 |
tatttatgtttgtcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgttggca |
489 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15638689 |
tatttatgcttatcctgaaagagatgaaactcttatctactatatagagtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgtttgca |
15638788 |
T |
|
| Q |
490 |
ctgaggattttggtacatggtgatatgtgttgtgcagggattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatcca |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15638789 |
ctgaggattttggtacatggtgatatgtgtgatgcagggattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccg |
15638888 |
T |
|
| Q |
590 |
ttattggttcactcaatccaatggtaaaaatcacttaattccagtttatatctcgaattttgttttattctgattctgaacatcgttccttcccaaagcc |
689 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
15638889 |
ttattggttcactcaatccaatggtaaaaatcacttaattccagtttataactcgaa-tttgttttattctgattctatacattgttccttcccagagcc |
15638987 |
T |
|
| Q |
690 |
acttcatatc |
699 |
Q |
| |
|
|||||||||| |
|
|
| T |
15638988 |
acttcatatc |
15638997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 290 - 699
Target Start/End: Original strand, 15615426 - 15615823
Alignment:
| Q |
290 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacgtttcatatttattaggcattgacactca |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
15615426 |
taatatttactagttaacctttgactttctttgaggtat--gcttgaataacatacacatatcatttgtacttttcatatttattaggtattgacactca |
15615523 |
T |
|
| Q |
390 |
tatttatgtttgtcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgttggca |
489 |
Q |
| |
|
||||||| | | ||| |||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15615524 |
tatttatt----------aggtattgacactcttatctactatatagagtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgtttgca |
15615613 |
T |
|
| Q |
490 |
ctgaggattttggtacatggtgatatgtgttgtgcagggattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatcca |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15615614 |
ctgaggattttggtacatggtgatatgtgtgatgcagggattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattgacgaaatacg |
15615713 |
T |
|
| Q |
590 |
ttattggttcactcaatccaatggtaaaaatcacttaattccagtttatatctcgaattttgttttattctgattctgaacatcgttccttcccaaagcc |
689 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
15615714 |
ttattggttcactcaatccaatggtaaaaatcacttaattccggtttataactcgaattttgttttattctgattctgtacattgttccttcccaaagcc |
15615813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 290 - 531
Target Start/End: Original strand, 15649752 - 15649991
Alignment:
| Q |
290 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacgtttcatatttattaggcattgacactca |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
15649752 |
taatatttactagttaacctttgactttctttgaggtat--gcttgaataacatacacatatcatttgtacttttcatagttattaggtattgacactca |
15649849 |
T |
|
| Q |
390 |
tatttatgtttgtcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgttggca |
489 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15649850 |
tatttatgtttatcctgaaagagatgaaactcttatctactatatagtgtatcaaacagtaaatgttaatagtaccctctttattcacgaaatgttggca |
15649949 |
T |
|
| Q |
490 |
ctgaggattttggtacatggtgatatgtgttgtgcagggatt |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15649950 |
ctgaggattttggtacatggtgatatgtgtgatgcagggatt |
15649991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 290 - 531
Target Start/End: Original strand, 15625992 - 15626234
Alignment:
| Q |
290 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacgtttcatatttattaggcattgacactca |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
15625992 |
taatatttactagttaacctttgactttctttgaggtat--gcttaaataacatacacatatcatttgtacttttcatatttattaggtattgacactca |
15626089 |
T |
|
| Q |
390 |
tatttatgtttgtcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaa---tagtaccctctttattcacgaaatgttg |
486 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || | |||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15626090 |
tatttatgtttatcctgaaagagatgaaactcttatctactatatagtgtatcaaaaattaaatgttaatagtagtaccctctttattcacgaaatgttt |
15626189 |
T |
|
| Q |
487 |
gcactgaggattttggtacatggtgatatgtgttgtgcagggatt |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15626190 |
gcactgaggattttggtacatggtgatatgtgtgatgcagggatt |
15626234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 528 - 698
Target Start/End: Complemental strand, 16673161 - 16672990
Alignment:
| Q |
528 |
gattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatggtaaaaatcacttaa |
627 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |||||||||||| || ||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16673161 |
gattaccaacaaggtggcgaaaactctcacctcaaagctgaaaaactcattggtgacgtccgttcttggttcactcaatccaatggtaaaaatcacttaa |
16673062 |
T |
|
| Q |
628 |
ttccagtttatatctcgaattttgttttattctgattctgaac-atcgttccttcccaaagccacttcatat |
698 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||| | ||||||||||| || ||||||||||||| |
|
|
| T |
16673061 |
ttctcgtttataactcgaattttgttttattctgattctattcaatcgttccttcgcagagccacttcatat |
16672990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 15615270 - 15615355
Alignment:
| Q |
134 |
cttaatttgtagaataggcaaaaactttaactttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagatataag |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15615270 |
cttaatttgtagaataggcaagaactttaactttttgcaaaactgttaagaattgtgtgttgtctgagtatgttatgagatataag |
15615355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 15638433 - 15638518
Alignment:
| Q |
134 |
cttaatttgtagaataggcaaaaactttaactttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagatataag |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15638433 |
cttaatttgtagaataggcaagaactttaaccttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagatataag |
15638518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 15606915 - 15606999
Alignment:
| Q |
134 |
cttaatttgtagaataggcaaaaactttaactttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagatataa |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15606915 |
cttaatttgtagaataggcaagaactttaactttttgcaaaactgttaagaattgtgtgttgtctgagtatgttatgagatataa |
15606999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 15625839 - 15625921
Alignment:
| Q |
137 |
aatttgtagaataggcaaaaactttaactttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagatataag |
219 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15625839 |
aatttgtaaaataggcaagaactttaactttttgcaaaattgttaagaattgtgtgttgtatgagtatgttatgagatataag |
15625921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 15649599 - 15649681
Alignment:
| Q |
137 |
aatttgtagaataggcaaaaactttaactttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagatataag |
219 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15649599 |
aatttgtaaaataggcaagaactttaactttttccaaaactgttaagaattgtgtgttgtatgagtatgttatgagatataag |
15649681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 528 - 612
Target Start/End: Original strand, 15626352 - 15626436
Alignment:
| Q |
528 |
gattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatg |
612 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
15626352 |
gattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattaacgaaatccgttcttggttcactcaatccaatg |
15626436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 528 - 612
Target Start/End: Original strand, 15650109 - 15650193
Alignment:
| Q |
528 |
gattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatg |
612 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||| |
|
|
| T |
15650109 |
gattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattaacgaaatccgttcttggttcattcaatccaatg |
15650193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 402 - 519
Target Start/End: Complemental strand, 13738576 - 13738453
Alignment:
| Q |
402 |
tcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaa--tagtaccctctttattca----cgaaatgttggcactgagg |
495 |
Q |
| |
|
||||| ||| ||||||||||| |||| | | |||||||||||||||||||||| || ||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
13738576 |
tcctggaagggatgaaactctcatctggtatatagtgtatcaaaaagtaaatgtcaatctagcaccctctttatgcatgactgaaatgttggcactgagg |
13738477 |
T |
|
| Q |
496 |
attttggtacatggtgatatgtgt |
519 |
Q |
| |
|
||||| || ||||||||||||||| |
|
|
| T |
13738476 |
atttttgtgcatggtgatatgtgt |
13738453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 402 - 531
Target Start/End: Complemental strand, 13765408 - 13765273
Alignment:
| Q |
402 |
tcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaat--agtaccctctttattcacgaa----atgttggcactgagg |
495 |
Q |
| |
|
||||| ||| ||||||||||| |||| | | |||||||||||||| ||||||||||| || ||||||||||| | ||| |||||||| ||||| |
|
|
| T |
13765408 |
tcctggaagggatgaaactctcatctggtatatagtgtatcaaaaaataaatgttaatctagcaccctctttatgtatgaatgaaatgttggctctgaga |
13765309 |
T |
|
| Q |
496 |
attttggtacatggtgatatgtgttgtgcagggatt |
531 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||| |
|
|
| T |
13765308 |
atttttgtgcatggtgatatgtgtgatgcagggatt |
13765273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 459
Target Start/End: Complemental strand, 11614794 - 11614740
Alignment:
| Q |
405 |
tgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaat |
459 |
Q |
| |
|
|||||||||||||||||| | || | | |||||||||||||||||||||||||| |
|
|
| T |
11614794 |
tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat |
11614740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 438 - 515
Target Start/End: Original strand, 35080271 - 35080350
Alignment:
| Q |
438 |
gtatcaaaaagtaaatgttaat--agtaccctctttattcacgaaatgttggcactgaggattttggtacatggtgatat |
515 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||| | | |||||||||| |||||||||||| || |||||||||| |
|
|
| T |
35080271 |
gtatcaaacagtaaatgttaatctagcaccctctttttgaatgaaatgttggtactgaggatttttgtggatggtgatat |
35080350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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