View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0151_1D_low_29 (Length: 291)

Name: NF0151_1D_low_29
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0151_1D_low_29
NF0151_1D_low_29
[»] scaffold0048 (1 HSPs)
scaffold0048 (9-279)||(76609-76879)
[»] scaffold0103 (3 HSPs)
scaffold0103 (92-257)||(17452-17622)
scaffold0103 (146-211)||(17639-17704)
scaffold0103 (132-173)||(17661-17702)
[»] chr2 (3 HSPs)
chr2 (92-257)||(16932654-16932824)
chr2 (146-211)||(16932572-16932637)
chr2 (132-173)||(16932574-16932615)
[»] chr5 (2 HSPs)
chr5 (66-170)||(25582728-25582831)
chr5 (205-279)||(25582860-25582934)
[»] chr7 (2 HSPs)
chr7 (66-172)||(9694430-9694535)
chr7 (181-279)||(9694528-9694626)
[»] chr4 (2 HSPs)
chr4 (66-172)||(13560807-13560912)
chr4 (181-279)||(13560905-13561003)
[»] chr1 (1 HSPs)
chr1 (205-279)||(20947091-20947165)


Alignment Details
Target: scaffold0048 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 76609 - 76879
Alignment:
Q  9 taggaagaacgataattggcgaggtaaaaaccttaaactagaaacgaggaatgaagcgttgccgttagaattaagtacgtaggaaataaggggagctagt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||||    
T  76609 taggaagaacgataattggcgaggtaaaaaccttaaactagaaacgaggaatggatcgttgccgttagaatgaagtacgtagtaaataaggggagctagt 76708  T
Q  109 gttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggcgacgatgtttagtaatgaagaatccatgatgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| | |||||||    
T  76709 gttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggtgacaatgttgagtaatgaagaagcgatgatgt 76808  T
Q  209 tgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgtaattgggagctgttgatgatgt 279  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  76809 tgattaatgatcacgtaaatgatgagtttgacaaatgaaattatgttgtaattgtgagctgttgatgatgt 76879  T

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Target: scaffold0103 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 257
Target Start/End: Complemental strand, 17622 - 17452
Alignment:
Q  92 aaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggcgacgatgtttagtaa 191  Q
    ||||||||||| | |||||||||| ||||||||||| |||| ||||||  |||||||||| |||  |||||| |||||||||   ||||||||| |||||    
T  17622 aaataaggggatccagtgttgagtttaggttttaattacaa-tgttgataaatgacaatgctgagaaatgacaatgttgagtaatgacgatgttgagtaa 17524  T
Q  192 tgaagaatccatgatgttga------ttaatgatcacgtaaataatgagtctgacaaatgaaattatgttgt 257  Q
    ||||||| ||||||||||||      || ||||| |||||||| |||||||| ||| |||||||||||||||    
T  17523 tgaagaaaccatgatgttgaataatgttgatgatgacgtaaatgatgagtctaacagatgaaattatgttgt 17452  T

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Target: scaffold0103; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 17704 - 17639
Alignment:
Q  146 acaatgttgaataatgacgatgttgagtggcgacgatgtttagtaatgaagaatccatgatgttga 211  Q
    ||||||||||  |||||| |||||||||   ||||||||  |||||||||||| ||||||||||||    
T  17704 acaatgttgagaaatgacaatgttgagtaatgacgatgtggagtaatgaagaaaccatgatgttga 17639  T

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Target: scaffold0103; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 17702 - 17661
Alignment:
Q  132 aatgttgagtaatgacaatgttgaataatgacgatgttgagt 173  Q
    ||||||||| |||||||||||||| |||||||||||| ||||    
T  17702 aatgttgagaaatgacaatgttgagtaatgacgatgtggagt 17661  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 257
Target Start/End: Original strand, 16932654 - 16932824
Alignment:
Q  92 aaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggcgacgatgtttagtaa 191  Q
    ||||||||||| | |||||||||| ||||||||||| |||| ||||||  |||||||||| |||  |||||| |||||||||   ||||||||| |||||    
T  16932654 aaataaggggatccagtgttgagtttaggttttaattacaa-tgttgataaatgacaatgctgagaaatgacaatgttgagtaatgacgatgttgagtaa 16932752  T
Q  192 tgaagaatccatgatgttga------ttaatgatcacgtaaataatgagtctgacaaatgaaattatgttgt 257  Q
    ||||||| ||||||||||||      || ||||| |||||||| |||||||| ||| |||||||||||||||    
T  16932753 tgaagaaaccatgatgttgaataatgttgatgatgacgtaaatgatgagtctaacagatgaaattatgttgt 16932824  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 16932572 - 16932637
Alignment:
Q  146 acaatgttgaataatgacgatgttgagtggcgacgatgtttagtaatgaagaatccatgatgttga 211  Q
    ||||||||||  |||||| |||||||||   ||||||||  |||||||||||| ||||||||||||    
T  16932572 acaatgttgagaaatgacaatgttgagtaatgacgatgtggagtaatgaagaaaccatgatgttga 16932637  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 16932574 - 16932615
Alignment:
Q  132 aatgttgagtaatgacaatgttgaataatgacgatgttgagt 173  Q
    ||||||||| |||||||||||||| |||||||||||| ||||    
T  16932574 aatgttgagaaatgacaatgttgagtaatgacgatgtggagt 16932615  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 25582728 - 25582831
Alignment:
Q  66 gttgccgttagaattaagtacgtaggaaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacga 165  Q
    ||||||||||| || |||| ||||| ||||||||||||| | | ||||||| | ||||||||||| ||||||||| |||||||||||||| |||| || |    
T  25582728 gttgccgttagtatgaagtgcgtagtaaataaggggagccaatattgagtgcaagttttaatgac-aatgttgagaaatgacaatgttgagtaataacaa 25582826  T
Q  166 tgttg 170  Q
    |||||    
T  25582827 tgttg 25582831  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 25582860 - 25582934
Alignment:
Q  205 atgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgtaattgggagctgttgatgatgt 279  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||| ||||||| ||  ||| | ||||||||||    
T  25582860 atgttgattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgtagttatgagttattgatgatgt 25582934  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 9694430 - 9694535
Alignment:
Q  66 gttgccgttagaattaagtacgtaggaaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacga 165  Q
    |||||||||||||| |||| ||||| ||| ||||||||| | ||||||||||  |||||||| | ||||||| || ||||| |||||||| |||| || |    
T  9694430 gttgccgttagaatgaagtgcgtagtaaacaaggggagccaatgttgagtgtgagttttaat-aaaaatgttaagaaatgaaaatgttgagtaataacaa 9694528  T
Q  166 tgttgag 172  Q
    |||||||    
T  9694529 tgttgag 9694535  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 9694528 - 9694626
Alignment:
Q  181 atgtttagtaatgaagaatccatgatgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgtaattgggagctgttgatgatgt 279  Q
    ||||| || |||||||||  ||| ||||  ||||||||| |||||||| |||||||||||| |||||||| ||||||| ||  ||| | ||||||||||    
T  9694528 atgttgagcaatgaagaaatcataatgtacattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgtagttatgagttattgatgatgt 9694626  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 13560807 - 13560912
Alignment:
Q  66 gttgccgttagaattaagtacgtaggaaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacga 165  Q
    |||||||||||||| |||| ||||| ||| ||||||||| | ||||||||||  |||||||| | ||||||| || ||||| |||||||| |||| || |    
T  13560807 gttgccgttagaatgaagtgcgtagtaaacaaggggagccaatgttgagtgtgagttttaat-aaaaatgttaagaaatgaaaatgttgagtaataacaa 13560905  T
Q  166 tgttgag 172  Q
    |||||||    
T  13560906 tgttgag 13560912  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 13560905 - 13561003
Alignment:
Q  181 atgtttagtaatgaagaatccatgatgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgtaattgggagctgttgatgatgt 279  Q
    ||||| || |||||||||  ||| ||||  ||||||||| |||||||| |||||||||||| |||||||| ||||||| ||  ||| | ||||||||||    
T  13560905 atgttgagcaatgaagaaatcataatgtacattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgtagttatgagttattgatgatgt 13561003  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 20947165 - 20947091
Alignment:
Q  205 atgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgtaattgggagctgttgatgatgt 279  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||| ||||||| ||  ||| | ||||||||||    
T  20947165 atgttgattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgtagttatgagttattgatgatgt 20947091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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