View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_low_3 (Length: 699)
Name: NF0151_1D_low_3
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 139 - 699
Target Start/End: Original strand, 33598718 - 33599303
Alignment:
| Q |
139 |
atccaacagctcaattaaaatccgtgtaaa----------atcgcacggtcggaaacacggacaacatttgcaacattagaattagcaacaaaaccaaaa |
228 |
Q |
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| T |
33598718 |
atccaacagctcaattaaaatccgtgtaaaccactgtataatcgcacggtcggaaacacggacagcatttgcaacattagaattagcaacgaaaccaaat |
33598817 |
T |
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| Q |
229 |
tggaattggtcatcgaaccttagatatcgtttaagctttttcaccagctgaaagtattcaagaaaaaa-tcgaagtttcaatttccaacaatttaaatat |
327 |
Q |
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| T |
33598818 |
tggaattggtcatcgaaccttaggcatcgtttaagctttttcaccagctgaaagtattcaagaaaaaaatcaaagtttcaatttccaaaaatttaaatat |
33598917 |
T |
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| Q |
328 |
aatataatttcaatttccaacaatctaaatctaatataaacatgtaagtatcagagtgtagtgtattaccttaaaatacagagtaagcttaagaaaaaga |
427 |
Q |
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| T |
33598918 |
aatataatttcaatttccaacaatctaaatctaatataaacatgtaagtatcagagtgtagtgtattaccttaaaatacggagtaagcttaagaaaaaga |
33599017 |
T |
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| Q |
428 |
attactatatgagcgtttagcgcatcaagaagccttcgaaagctacaaaatatttattcaaaatttatttttaatgtgaataaacacacaaaatagattt |
527 |
Q |
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|||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33599018 |
attattatatcagcgttcagcgcatcaagaagccttcgaaagctacaaaatatttattcaaaatttatttttaatgtgaataaacacacaaaatagattt |
33599117 |
T |
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| Q |
528 |
gttnnnnnnnnnnnncacaaaatagattgaaaatacaagtttaccattctcggtcaccagtgtcaaagggcacacgcgcagcag---------------- |
611 |
Q |
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| T |
33599118 |
gtt--aaaaaaaaaacacaaaatagattgaaaatacaagtttaccattctcggtcaccagtgtcaaaggccacacgcgcagcagtaagctttttcaagaa |
33599215 |
T |
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| Q |
612 |
tattgaacccgcaacactaaaaagatgacattgcccatgaatattcacataattaaacattaaaaatatatcaaaataatcaacaaat |
699 |
Q |
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| T |
33599216 |
tattgaacccacaacactaaaaagatgacattgcccatgaatattcacataattaaacattaaaaatatatcaaaataatcaacaaat |
33599303 |
T |
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