View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_low_30 (Length: 280)
Name: NF0151_1D_low_30
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_30 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 40 - 280
Target Start/End: Original strand, 39266651 - 39266891
Alignment:
| Q |
40 |
ttgagttttcattggtatcgcaaatgtctaaaataatcacagtcaaatgagcacattggaattgaaataaaaataaaaacaacacttattggtacgcgga |
139 |
Q |
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| T |
39266651 |
ttgagttttcattggtatgggaaatgtctaaaataatagcagtcaaatgagcacattggaattgaaataaaaataaaaacaacacttattggtacgttga |
39266750 |
T |
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| Q |
140 |
ttttaggaaaaacaaaaccatcagtatttgaatttcaaatttggcatataggaggagggaaaattttaggtttaagtgaccattagcaattaatgaagga |
239 |
Q |
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| T |
39266751 |
ttttatgaaaaacaaaaccatcagtatttgaatttcaaatttggcatataggaggagggaaaattttaggcttaagtgaccattagcaattaatgaagga |
39266850 |
T |
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| Q |
240 |
ttattaaaaggaaaaattaggttaaatgatagcaagaccta |
280 |
Q |
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| T |
39266851 |
ttattagagggaaaaattaggttaaatgatagcaagaccta |
39266891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 114 - 279
Target Start/End: Complemental strand, 24118625 - 24118458
Alignment:
| Q |
114 |
aaaaacaacacttattggtacgcggatt-ttaggaaaaacaaaaccatcagtatttgaatttcaaatttggcatataggaggagggaaaattt-taggtt |
211 |
Q |
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| T |
24118625 |
aaaaccaacacttatctatacacggattattagggaaaactaaaccatcagtatttgaatttcaaattaggcatagaagaggagggaaaatttgtaaggt |
24118526 |
T |
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| Q |
212 |
taagtgaccattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacct |
279 |
Q |
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| T |
24118525 |
taagggaccattagcaattaatgaaggtttattagagggaaaaattaggttaaaaggttgcaagacct |
24118458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 19514590 - 19514467
Alignment:
| Q |
157 |
ccatcagtatttgaatttcaaatttggcatataggaggagggaaaattt-taggtttaagtgaccattagcaattaatgaaggattattaaaaggaaaaa |
255 |
Q |
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| T |
19514590 |
ccatcagcatttgaatttcaaattaggcatagaagaggagggaaaatttgtagggttaagggaccattagcaattaatgaaggtttattagagggaaaaa |
19514491 |
T |
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| Q |
256 |
ttaggttaaatgatagcaagacct |
279 |
Q |
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| T |
19514490 |
ttaggttaaaaggttgcaagacct |
19514467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 280
Target Start/End: Complemental strand, 28000891 - 28000692
Alignment:
| Q |
82 |
tcaaatgagcacattggaattgaaataaaaataaaaacaacacttattggtacgcggatttta-ggaaaaacaaaaccatcag-tatttgaatttcaaat |
179 |
Q |
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| T |
28000891 |
tcaaatgagtacattgaaatttaaataaaaatcaaaccaacacttattgataggcggattttatggaaatac--aaccatcagacttttgaatttcaaat |
28000794 |
T |
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| Q |
180 |
ttggcatataggaggagggaaaattt-taggtttaagtgaccattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacc |
278 |
Q |
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| T |
28000793 |
ggggcatagaagaggagggaaaatttgcaggattgagggatcattagcaattaatgaaaggttatttgagggaaaaattagggttaatgatagcatgacc |
28000694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 279
Target Start/End: Complemental strand, 35802 - 35676
Alignment:
| Q |
154 |
aaaccatcagtatttgaatttcaaatttggcatataggaggaggg-aaaattttaggtttaagtgaccattagcaattaatgaaggattattaaaaggaa |
252 |
Q |
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||||||||| ||||||||||||||||| |||||| | |||||||| |||||| || | ||||| |||||||||||| |||||||| |||||| | |||| |
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| T |
35802 |
aaaccatcactatttgaatttcaaattaggcatagaagaggagggaaaaattgtaaggttaagggaccattagcaaataatgaagctttattagagggaa |
35703 |
T |
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| Q |
253 |
aaattaggttaaatgatagcaagacct |
279 |
Q |
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| T |
35702 |
aaattatgttaaaaggttgcaagacct |
35676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 279
Target Start/End: Complemental strand, 41115 - 40989
Alignment:
| Q |
154 |
aaaccatcagtatttgaatttcaaatttggcatataggaggaggg-aaaattttaggtttaagtgaccattagcaattaatgaaggattattaaaaggaa |
252 |
Q |
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||||||||| ||||||||||||||||| |||||| | |||||||| |||||| || | ||||| |||||||||||| |||||||| |||||| | |||| |
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| T |
41115 |
aaaccatcactatttgaatttcaaattaggcatagaagaggagggaaaaattgtaaggttaagggaccattagcaaataatgaagctttattagagggaa |
41016 |
T |
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| Q |
253 |
aaattaggttaaatgatagcaagacct |
279 |
Q |
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| T |
41015 |
aaattatgttaaaaggttgcaagacct |
40989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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