View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_low_31 (Length: 277)
Name: NF0151_1D_low_31
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29632081 - 29631844
Alignment:
| Q |
1 |
ctctctggagtggcgataacaaggttaggcctggctaccaattgttttgcctgtatacgtttgtctaaaccacccacaaccaccgtaaggatgaggcgga |
100 |
Q |
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| T |
29632081 |
ctctctggagtggcgataacaaggttaggcctggctaccaattgttttgcctgaatacgtttgtctaaaccacccacaaccaccgtaaggatgaggcgga |
29631982 |
T |
|
| Q |
101 |
gcgaggacccaaggatccaaaactggtgagccagctgaaccgcaagctcgcgggtgggcgtcagtacaagagcaaacacaccaaaaggagtctcaccgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29631981 |
gcgaggacccaaggatccaaaactggtgagccagctgaaccgcaagctcgcgggtgggcgtcagtacaagagcaaacacaccaaaaggagtctcaccgag |
29631882 |
T |
|
| Q |
201 |
gcgttgaagaataggaagcgcaaaagctgctgttttac |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29631881 |
gcgttgaagaataggaagcgcaaaagctgctgttttac |
29631844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 29630974 - 29630795
Alignment:
| Q |
1 |
ctctctggagtggcgataacaaggttaggcctggctaccaattgttttgcctgtatacgtttgtctaaaccacccacaaccaccgtaaggatgaggcgga |
100 |
Q |
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|
||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| || | |||| || |||||||||| ||||||||| || || ||| |
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| T |
29630974 |
ctctctggagtggcgataacaaggtgaggactggctaccaattattttgcctgtgtaggactgtcataatcacccacaacaaccgtaaggctggggagga |
29630875 |
T |
|
| Q |
101 |
gcgaggacccaaggatccaaaactggtgagccagctgaaccgcaagctcgcgggtgggcgtcagtacaagagcaaacaca |
180 |
Q |
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|
| T |
29630874 |
gcgaggacccaagggccaaaaactggtctgccagctgaatcgcaagctcgcgcgtgggcgtcagcacgagagcaaacaca |
29630795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 29630766 - 29630725
Alignment:
| Q |
197 |
cgaggcgttgaagaataggaagcgcaaaagctgctgttttac |
238 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
29630766 |
cgaggcgttgaagaatgggaagcgcaaaagctgccgttttac |
29630725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 27663897 - 27664005
Alignment:
| Q |
130 |
gccagctgaaccgcaagctcgcgggtgggcgtcagtacaagagcaaacacaccaaaaggagtctcaccgaggcgttgaagaataggaagcgcaaaagctg |
229 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||||| ||||| |||||||||||||| | | ||| | || || || ||||| ||||||||||| || | |
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| T |
27663897 |
gccaactgaaacgcaagctcgcgcgtgggcgtcaccacaagcgcaaacacaccaaacgtatgttcagcaagccgctgcagaatcggaagcgcaaatgccg |
27663996 |
T |
|
| Q |
230 |
ctgttttac |
238 |
Q |
| |
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||||||||| |
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|
| T |
27663997 |
ctgttttac |
27664005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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