View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_low_37 (Length: 265)
Name: NF0151_1D_low_37
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 2 - 259
Target Start/End: Complemental strand, 18422279 - 18422014
Alignment:
| Q |
2 |
tcaatgagatgaaaactcatctgagggtgtccttcatggtcaagaaaagtttctgtttcgtcttcaatataaggtttggacttggagtaatgtcaataac |
101 |
Q |
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| T |
18422279 |
tcaatgaggtgaaaactcatatgagggtgtccttcatggtcaagaaaagtttctgtttcgtcttcaatatgagtttgggacttggagtaatgtcgataac |
18422180 |
T |
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| Q |
102 |
accgtttcc------ctgagcccacatccgcagacaaactctgccttgcatattgagcaaatctttgtcccaaaccattcaataaaacagacttatgatg |
195 |
Q |
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| T |
18422179 |
accgtttccgaacttctgagcccacatccgcatacaaactctgccttgcatatcgagcaaatctttgtcccaaaccattcaataaaacagacttatgatg |
18422080 |
T |
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| Q |
196 |
tgaaaaa-atgttaccatctgggacgatat-atatggccacctatcaccattttgtccaccactac |
259 |
Q |
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| T |
18422079 |
tgaaaaagatgtgaccatctgggacgatatggccaggccacctatcaccattttgtccaccactac |
18422014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 259
Target Start/End: Complemental strand, 18435790 - 18435530
Alignment:
| Q |
2 |
tcaatgagatgaaaactcatctgagggtgtccttcatggtcaagaaaagtttctgtttcgtcttcaatataaggtttggacttggagtaatgtcaataac |
101 |
Q |
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|||||||| ||||||||||| | ||||||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||| ||| || || |
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| T |
18435790 |
tcaatgaggtgaaaactcatataagggtgtccttcatggtgaagaaaagtttttgtttcatcttcaatataagttttggacttggagtaacgtcgatcac |
18435691 |
T |
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| Q |
102 |
accgtttccc------tgagcccacatccgcagacaaactctgccttgcatattgagcaaatctttgtcccaaaccattcaataaaacagacttatgatg |
195 |
Q |
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| T |
18435690 |
accgtttccaaacttttgagcccacatccgcatacaaactctgccttgcatattgagcaaatctttgtcccaaaccattcaataaaacagacttatcatg |
18435591 |
T |
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| Q |
196 |
tgaaaaa-atgttaccatctgggacgatatatatggccacctatcaccattttgtccaccactac |
259 |
Q |
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||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
18435590 |
tgaaaaagatgtgaccatctgggacg----atatgaccacctatcaccattttgtccaccactac |
18435530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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