View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0151_1D_low_38 (Length: 260)
Name: NF0151_1D_low_38
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0151_1D_low_38
Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 24416666 - 24416545
Alignment:
Q
106
aaatgttatcttaatgataaaaatcattgttaggggcatggaaaatgtaagggagtgaatgtaaatgaaataataaaataattgtgctgattgtgtttgt
205
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
24416666
aaatgttatcttaatgataaaaatcattgttaggggcatggaaaatgtaagggagtgaatgtaaatgaaataataaaataattgtgctgattgtgtttgt
24416567
T
Q
206
ggtagagactagggttgctgtt
227
Q
||||||||| ||||||||||||
T
24416566
ggtagagacaagggttgctgtt
24416545
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 29148580 - 29148519
Alignment:
Q
161
tgaatgtaaatgaaataataaaataattgtgctgattgtgtttgtggtagagactagggttg
222
Q
|||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |||||||
T
29148580
tgaatggaaatgaaataataacataattgtgctgattgtgtctgtggtagagacaagggttg
29148519
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 29151617 - 29151529
Alignment:
Q
106
aaatgttatcttaatgataaaaatcattgttaggggcatggaaaatgtaagggagtgaatgtaaatgaaataataaaataattgtgctg
194
Q
|||||||| || |||||| ||||||| |||||||| |||||||||| || ||| | |||| |||||||||||||| ||| ||||||||
T
29151617
aaatgttagctaaatgattgaaatcatggttaggggtatggaaaatgcaaaggaataaatggaaatgaaataataacatagttgtgctg
29151529
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 24416530 - 24416497
Alignment:
Q
227
ttagggtgctgaatgacagacttttataaattgg
260
Q
||||||||||| ||||||||||||||||||||||
T
24416530
ttagggtgctgcatgacagacttttataaattgg
24416497
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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