View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0151_1D_low_40 (Length: 254)

Name: NF0151_1D_low_40
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0151_1D_low_40
NF0151_1D_low_40
[»] chr4 (8 HSPs)
chr4 (4-249)||(38081976-38082221)
chr4 (13-221)||(38086410-38086618)
chr4 (13-234)||(38061661-38061882)
chr4 (13-214)||(38072900-38073101)
chr4 (13-227)||(38058572-38058786)
chr4 (13-161)||(37954234-37954382)
chr4 (13-51)||(38125640-38125678)
chr4 (13-51)||(38129593-38129631)
[»] chr6 (3 HSPs)
chr6 (17-146)||(7001405-7001534)
chr6 (120-232)||(10792940-10793055)
chr6 (17-49)||(10792892-10792924)
[»] chr1 (2 HSPs)
chr1 (120-232)||(34268580-34268695)
chr1 (17-49)||(34268711-34268743)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 4 - 249
Target Start/End: Original strand, 38081976 - 38082221
Alignment:
Q  4 agattattcttgggctattagaggcggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagcaacagtgacggtg 103  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38081976 agattatttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagcaacagtgacggtg 38082075  T
Q  104 tttacagttccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatcaatattg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38082076 tttacagttccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatcaatattg 38082175  T
Q  204 tctttcaaaggataaattcaagtaaaaaaggcgagacaacaattct 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38082176 tctttcaaaggataaattcaagtaaaaaaggcgagacaacaattct 38082221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 38086410 - 38086618
Alignment:
Q  13 ttgggctattagaggcggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagcaacagtgacggtgtttacagtt 112  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| |||  ||||| |||||||| |||    
T  38086410 ttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgtttactgtt 38086509  T
Q  113 ccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatcaatattgtctttcaaa 212  Q
    |||| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||| ||||||||||  ||||    
T  38086510 ccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccatgaatattgtctggcaaa 38086609  T
Q  213 ggataaatt 221  Q
    || ||||||    
T  38086610 gggtaaatt 38086618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 38061882 - 38061661
Alignment:
Q  13 ttgggctattagaggcggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagcaacagtgacggtgtttacagtt 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |||  ||| | ||||| |  ||     
T  38061882 ttgggctattagaggaggtggaggagcaagttttggagtcataatttcatggaaggttaaacttgttcaagttccatcaagtgtgtcagtgttcaatgtg 38061783  T
Q  113 ccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatcaatattgtctttcaaa 212  Q
    |||| | ||||||| |||||||||||||||||||||||||||||||||| | || |||||| |||||||||||||||||||||  || || |||| ||||    
T  38061782 ccaaaaacattggatcaaaatgcaacaaagcttgttcacaagtggcagtttgtgacaagtacaattgatgaaaacatagccatttatgttatcttgcaaa 38061683  T
Q  213 ggataaattcaagtaaaaaagg 234  Q
    || |||||| ||||||||||||    
T  38061682 gggtaaatttaagtaaaaaagg 38061661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 38072900 - 38073101
Alignment:
Q  13 ttgggctattagaggcggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagcaacagtgacggtgtttacagtt 112  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||| |||||||| |||| || ||||||||||| |||    
T  38072900 ttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttcaagttccatcaactgtaacggtgtttactgtt 38072999  T
Q  113 ccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatcaatattgtctttcaaa 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| | | ||   |||| |||| |||||| ||||||| |||||| |||| ||||    
T  38073000 ccaagaacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgtagctcataaacttgaagaaaacttagccattaatattatcttgcaaa 38073099  T
Q  213 gg 214  Q
    ||    
T  38073100 gg 38073101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 38058572 - 38058786
Alignment:
Q  13 ttgggctattagaggcggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagcaacagtgacggtgtttacagtt 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||  ||||| || || |  |||    
T  38058572 ttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagattaaacttgttcaagttccatcaattgtgacagtcttcaatgtt 38058671  T
Q  113 ccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatcaatattgtctttcaaa 212  Q
    |||| | |||||||||| ||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||| |||  || | | || |||| ||||    
T  38058672 ccaaaaacattggaacacaatgcaacaaagcttattcacaagtggcagtttttgacaagtagaattgatgaaaacttagaaattactgttatcttacaaa 38058771  T
Q  213 ggataaattcaagta 227  Q
    || ||||||||||||    
T  38058772 gggtaaattcaagta 38058786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 37954234 - 37954382
Alignment:
Q  13 ttgggctattagaggcggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagcaacagtgacggtgtttacagtt 112  Q
    ||||||||||||||| |||||||||||||| |||||||| || ||  |||||||| ||||||| ||| | |||||| |||| |||||  | || | ||||    
T  37954234 ttgggctattagaggaggtggaggagcaagctttggagttatcatagcatggaaggtaaaactagttcatgttccatcaactgtgacaatattcagagtt 37954333  T
Q  113 ccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagt 161  Q
     | ||  || ||||||| || ||||| |||||| |||| ||||||||||    
T  37954334 tctaggacactggaacataacgcaaccaagcttattcagaagtggcagt 37954382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 38125640 - 38125678
Alignment:
Q  13 ttgggctattagaggcggtggaggagcaagttttggagt 51  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  38125640 ttgggctattagaggaggtggaggagcaagttttggagt 38125678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 38129593 - 38129631
Alignment:
Q  13 ttgggctattagaggcggtggaggagcaagttttggagt 51  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  38129593 ttgggctattagaggaggtggaggagcaagttttggagt 38129631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 7001534 - 7001405
Alignment:
Q  17 gctattagaggcggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagcaacagtgacggtgtttacagttccaa 116  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||  ||   |||| ||||| |   | ||||    
T  7001534 gctattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtatgacagtgttgaatttgccaa 7001435  T
Q  117 gagcattggaacaaaatgcaacaaagcttg 146  Q
     | ||||||| |||||||||||||||||||    
T  7001434 aaacattggatcaaaatgcaacaaagcttg 7001405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 10792940 - 10793055
Alignment:
Q  120 cattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatca---atattgtctttcaaaggat 216  Q
    ||||||| |||||||||||||| ||||||||||| ||||||  | || |||||| |||||||| |||||||||||| |   || || |||| | |||| |    
T  10792940 cattggatcaaaatgcaacaaaacttgttcacaattggcagcttgtgacaagtataattgatgcaaacatagccattaattatgttatcttgctaagggt 10793039  T
Q  217 aaattcaagtaaaaaa 232  Q
    ||||||||||||||||    
T  10793040 aaattcaagtaaaaaa 10793055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 10792892 - 10792924
Alignment:
Q  17 gctattagaggcggtggaggagcaagttttgga 49  Q
    ||||||||||| |||||||||||||||||||||    
T  10792892 gctattagaggaggtggaggagcaagttttgga 10792924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 34268695 - 34268580
Alignment:
Q  120 cattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatca---atattgtctttcaaaggat 216  Q
    ||||||| |||||||||||||| ||||||||||| ||||||  | || |||||| |||||||| |||||||||||| |   || || |||| | |||| |    
T  34268695 cattggatcaaaatgcaacaaaacttgttcacaattggcagcttgtgacaagtataattgatgcaaacatagccattaattatgttatcttgctaagggt 34268596  T
Q  217 aaattcaagtaaaaaa 232  Q
    ||||||||||||||||    
T  34268595 aaattcaagtaaaaaa 34268580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 34268743 - 34268711
Alignment:
Q  17 gctattagaggcggtggaggagcaagttttgga 49  Q
    ||||||||||| |||||||||||||||||||||    
T  34268743 gctattagaggaggtggaggagcaagttttgga 34268711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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