View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_low_42 (Length: 245)
Name: NF0151_1D_low_42
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 41995349 - 41995131
Alignment:
| Q |
22 |
cagctcatgagcaagatcattgaattcgagtgcacttccattgcattttgatagcaactgagtggtttgttcctttgttaatctgattttcactctaatt |
121 |
Q |
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| T |
41995349 |
cagctcatgagcaagatcattgaattcgagtgcacttccattgcattttgatagcaactgagtggcttgttcctttgttaatctgattttcactctaatt |
41995250 |
T |
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| Q |
122 |
ccctctttatctcctaattcattactaatacatcttcttttctcaaattgatctttttcgttttcttctcccaaaatggtaggttctgaatccacaaacc |
221 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41995249 |
ccctctttttctcctaattcattactaatacatcttcttttctcaaattgatctttttcgttttcttctcccaaaatggtaggttctgaatccacaaacc |
41995150 |
T |
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| Q |
222 |
tgactcttttcttcattgt |
240 |
Q |
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||||||||||||||||||| |
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| T |
41995149 |
tgactcttttcttcattgt |
41995131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 41984038 - 41983826
Alignment:
| Q |
25 |
ctcatgagcaagatcattgaattcgagtgcacttccattgcattttgatagcaactgagtggtttgttcctttgttaatctgattttcactctaattccc |
124 |
Q |
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|||| |||||| ||| || ||||| || |||||||||||||| |||||||||||| || | |||||||||||||||||| || |||||||||||||| |
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| T |
41984038 |
ctcacgagcaacatccttcaattcaagaacacttccattgcatcttgatagcaactcagctgcttgttcctttgttaatctaatcgtcactctaattccc |
41983939 |
T |
|
| Q |
125 |
tctttatctcctaattcat---tactaatacatcttcttttctcaaattgatctttttcgttttcttctcccaaaatggtaggttctgaatccacaaacc |
221 |
Q |
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| T |
41983938 |
tctttttctactaaatcattactactaatacatctttttttctcaaattcttcattgttgttttcttctcccaaaatggttggttctgagtccacaaacc |
41983839 |
T |
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| Q |
222 |
tgactcttttctt |
234 |
Q |
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||| |||||||| |
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| T |
41983838 |
ggacccttttctt |
41983826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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