View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0151_1D_low_45 (Length: 237)

Name: NF0151_1D_low_45
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0151_1D_low_45
NF0151_1D_low_45
[»] chr4 (1 HSPs)
chr4 (10-231)||(44082761-44082983)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 44082761 - 44082983
Alignment:
10 gaaaagtgcattatttgatgtacaaaataaatagttcaaatggggaaattgggcttggttgtcttcaactatatctgtgtaatttttaaaattaaaagaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44082761 gaaaagtgcattatttgatgtacaaaataaatagttcaaatggggaaattgggcttggttgtcttcaactatatctgtgtaatttttaaaattaaaagaa 44082860  T
110 taacccttagatcaacttgaagaagcaaagtaattaataagataataacaactaaggaatattgttcaaatgaaaagt-nnnnnnnnnngtatgaataag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
44082861 taacccttagatcaacttgaagaagcaaagtaattaataagataataacaactaaggaatattgttcaaatgaaaagtaaaaaaaaaaagtatgaataag 44082960  T
209 aaggaagatgtgacataacacaa 231  Q
    |||||||||||||||||||||||    
44082961 aaggaagatgtgacataacacaa 44082983  T

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