View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_low_46 (Length: 236)
Name: NF0151_1D_low_46
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 23235648 - 23235427
Alignment:
| Q |
7 |
aacctgatttctgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagcggcaacctcgtcttaacctactttgatgatactattaatagga |
106 |
Q |
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| T |
23235648 |
aacctgatttctgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagccgcaacctcatcttaacctactttgatgatactattgatagga |
23235549 |
T |
|
| Q |
107 |
agccaacactagtcttttaccggcttcgctccatttttcaccaaagtcgctccatttttaattctgtaacggttaaaccgacccaactacactatccttt |
206 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| |
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| T |
23235548 |
agccaacactagtcttttaccggcttcactccatttttcaccgaagtcgctccatttttaactctgtaacggttaaacccacccaactacactatctttt |
23235449 |
T |
|
| Q |
207 |
ttacccactatacagtattatc |
228 |
Q |
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| |||||||||||||||||||| |
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| T |
23235448 |
tgacccactatacagtattatc |
23235427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 23231747 - 23231543
Alignment:
| Q |
16 |
tctgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagcggcaacctcgtcttaacctactttgatgatactattaataggaagccaacac |
115 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||||||| | ||| |||| |||| | |
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| T |
23231747 |
tctgatcccaatttcgcaaagaaacaccttcgcttatcaatcacccgccgcaacctcatcttaacctactttgatgatacttatgatatgaagtcaacgc |
23231648 |
T |
|
| Q |
116 |
tagtcttttaccggcttcgctccatttttcaccaaagtcgctccatttttaattctgtaacggttaaaccgacccaactacactatcctttttacccact |
215 |
Q |
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| T |
23231647 |
taatcttttaccggcttcactccatttttcacccgcttcgctccatttttaactctgtaacagttaaaccgacccaactacactatccttttgatccact |
23231548 |
T |
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| Q |
216 |
ataca |
220 |
Q |
| |
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||||| |
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| T |
23231547 |
ataca |
23231543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 23240239 - 23240162
Alignment:
| Q |
13 |
atttctgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagcggcaacctcgtcttaacctactttgat |
90 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| |
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| T |
23240239 |
atttctgatccttatttcgttaagaaacaccttcgcttatcaaccacccgaagcaacctcatcttaacctactttgat |
23240162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 23196293 - 23196339
Alignment:
| Q |
13 |
atttctgatcccaatttcgctaagaaacaccttcgcttatcaaccac |
59 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
23196293 |
atttctgatccaaagttcgctaagaaacaccttcgcttatcaaccac |
23196339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 23196401 - 23196478
Alignment:
| Q |
130 |
cttcgctccatttttcaccaaagtcgctccatttttaattctgtaacggttaaaccgacccaactacactatcctttt |
207 |
Q |
| |
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|||| ||||| |||||||||| || ||||||||||| |||||||| |||||||| |||||| ||| |||||||||| |
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| T |
23196401 |
cttcactccacttttcaccaatgtgattccatttttaactctgtaaccgttaaacctacccaaatacgctatcctttt |
23196478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 23240119 - 23240057
Alignment:
| Q |
160 |
atttttaattctgtaacggttaaaccgacccaactacactatcctttttacccactatacagt |
222 |
Q |
| |
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|||||||| |||| ||| |||||||| | |||||| |||||||||||| ||||| |||||||| |
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| T |
23240119 |
atttttaactctgcaacagttaaacccatccaactgcactatccttttgacccaatatacagt |
23240057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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