View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_low_49 (Length: 217)
Name: NF0151_1D_low_49
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 839345 - 839153
Alignment:
| Q |
22 |
aaacccttcatcactttagaaatgcatatataaaccgcacaaatttattagattttcaaatataaattatcaatataatctcaaaaatattactatctct |
121 |
Q |
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| T |
839345 |
aaacccttcatcactttagaaatgcatatataaaccgcacaaatttattagattttcaaatataaattatcaatataatctcaaaaatattactatctct |
839246 |
T |
|
| Q |
122 |
ccaatttagttattaaactatacaaaaatactaaatagtttcaaaagtataagaaatcaatcaatttagtaagtggtattaagatgtttgatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
839245 |
ccaatttagttattaaactatacaaaaatactaaatagctccaaaagtataagaaatcaatcaatttagtaagt-gtattaagatgtttgatat |
839153 |
T |
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