View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0151_1D_low_5 (Length: 619)

Name: NF0151_1D_low_5
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0151_1D_low_5
NF0151_1D_low_5
[»] scaffold0048 (1 HSPs)
scaffold0048 (23-605)||(75767-76349)
[»] chr1 (4 HSPs)
chr1 (36-477)||(21494657-21495096)
chr1 (346-526)||(20947678-20947858)
chr1 (238-500)||(21499601-21499863)
chr1 (32-159)||(10388655-10388782)
[»] chr2 (1 HSPs)
chr2 (337-513)||(22499208-22499384)
[»] chr6 (1 HSPs)
chr6 (340-540)||(31138608-31138808)
[»] chr8 (1 HSPs)
chr8 (337-570)||(22562044-22562277)
[»] scaffold0512 (1 HSPs)
scaffold0512 (337-526)||(8088-8277)
[»] chr7 (3 HSPs)
chr7 (337-566)||(12347925-12348154)
chr7 (337-526)||(9694150-9694337)
chr7 (336-505)||(11801336-11801505)
[»] scaffold1405 (1 HSPs)
scaffold1405 (346-526)||(629-809)
[»] chr4 (1 HSPs)
chr4 (337-526)||(13560527-13560714)
[»] chr5 (4 HSPs)
chr5 (337-526)||(25582447-25582636)
chr5 (386-501)||(10190111-10190226)
chr5 (337-399)||(23907871-23907933)
chr5 (467-544)||(17458702-17458779)
[»] chr3 (1 HSPs)
chr3 (417-526)||(22924662-22924771)
[»] scaffold0524 (1 HSPs)
scaffold0524 (440-476)||(4062-4098)


Alignment Details
Target: scaffold0048 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 23 - 605
Target Start/End: Original strand, 75767 - 76349
Alignment:
Q  23 gagtgcgggtatcttgtttaggacgatgagtaaacgatgaaacaggttaagtggtaagtaagagttaaagcaacggggaaggtcagagatgatcaaaata 122  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  75767 gagtgcgggtatcttgtataggacaatgagtaaacgatgaaacaggttaagtggtaagtaagagttaaagcaacggggaaggtcagagaagataaaaata 75866  T
Q  123 gtaaggaaatatattaagttagttaaggataagaagattatgacattaatagtgtaaatggtgtgattacacggtgaatcttaaagcatgaattggttaa 222  Q
    | |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75867 gcaaggaaatatattaagttagttaaggatagaaagattatgacattaatagtgtaaatggtgtgattacacggtgaatcttaaagcatgaattggttaa 75966  T
Q  223 tatggtggacaacaatataagaagagatatggggtgatggtttagaatagtggaggatgatataggtagattccttaggatagtaatgagctcaatatcg 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||    
T  75967 tatggtggacaacaatataagaagagatatggggtgatggtttagaatagtggaggatgatgtaggtagattctttagaatagtaatgagctcaatatcg 76066  T
Q  323 tagtggatagaagagtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattg 422  Q
    |||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  76067 tagtggatagaagagtgtagaaccaaaatgaacaaatagaataaaaaagaggtttaaggtaatgaagatgctaggtggagaaataagacaaagataattg 76166  T
Q  423 gaaatagaaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgattt 522  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  76167 aaaatagaaaggcgtaagttaaagtaagggataacgttagaaataatgataatggtgaggtaaggaccttaagttaaaatgaatagtgtgtggtcgattt 76266  T
Q  523 aagatgatggatgatgttgagaaaactaataagacgaattagaacggggtaagaaagttctatgttgagtaatggatgatgtc 605  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  76267 aagatgatggatgatgttgagaaaactgataagacgaattagaacggggaaagaaagttctatgttgagtaatgaatgatgtc 76349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 36 - 477
Target Start/End: Complemental strand, 21495096 - 21494657
Alignment:
Q  36 ttgtttaggacgatgagtaaacgatgaaacaggttaagtggtaagtaagagttaaagcaacggggaaggtcagagatgatcaaaatagtaaggaaatata 135  Q
    |||||||||| |  ||||||| |||||||  | ||||||||| |||||||||||||| || |||||||||  ||||| || | || | | ||| || |||    
T  21495096 ttgtttaggatggcgagtaaatgatgaaatggattaagtggtgagtaagagttaaagtaatggggaaggttggagattataataaaaatgagggaagata 21494997  T
Q  136 ttaagttagttaaggataagaagattatgacattaatagtgtaaatggtgtgattacacggtgaatcttaaagcatgaattggttaatatggtggacaac 235  Q
    |||| ||| |||||  |||  |||| | |||||||| |||||| |||||||| |||||| |||| |  |||| ||||||| ||||||||||||| || ||    
T  21494996 ttaatttaattaagattaattagatga-gacattaacagtgtagatggtgtggttacacagtgagt--taaaacatgaataggttaatatggtgaacgac 21494900  T
Q  236 aat-ataagaagagatatggggtgatggtttagaatagtggaggatgatataggtagattccttaggatagtaatgagctcaatatcgtagtggatagaa 334  Q
     || |||||||||||||||  |||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| || ||||| || ||||    
T  21494899 gattataagaagagatatgtagtgatggtttagaatagtggaggatgatgtaggtagatttcttagaatagtaatgagctcaagatagtagtagacagaa 21494800  T
Q  335 gagtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaagg 434  Q
    ||||||||| ||| ||||||||  |||||||||||||  ||||||||||||||| | | |||||| ||||||||||| ||| ||||   |||||||||||    
T  21494799 gagtgtagagccagaatgaacaggtagaatgatgaagtagtttaaggtaatgaaaatgttaggtgaagaaataagacgaaggtaatcttaaatagaaagg 21494700  T
Q  435 cgtaggttaaagtaagggataacgttagaaataatgataatgg 477  Q
    | || ||||||||||||||| | |||||||| |||||||||||    
T  21494699 cataagttaaagtaagggatgatgttagaaaaaatgataatgg 21494657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 346 - 526
Target Start/End: Complemental strand, 20947858 - 20947678
Alignment:
Q  346 caaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcgtaggttaaa 445  Q
    |||||| ||||| ||||||| ||||  |||||||||||||||||| |||||||| ||||||||||| || ||||||||||||| ||||||||| ||||||    
T  20947858 caaaattaacaagtagaatggtgaaatggtttaaggtaatgaagatgctaggtgaagaaataagacgaacataattggaaatataaaggcgtaagttaaa 20947759  T
Q  446 gtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga 526  Q
    ||||| ||||| |||||||| | ||||||||||||  ||| ||  ||| |||||||||||  | |||||||| ||||||||    
T  20947758 gtaagagataatgttagaaacattgataatggtgaaataacgaacttaggttaaaatgaaatgagtgtggtcaatttaaga 20947678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 238 - 500
Target Start/End: Original strand, 21499601 - 21499863
Alignment:
Q  238 tataagaagagatatggggtgatggtttagaatagtggaggatgatataggtagattccttaggatagtaatgagctcaatatcgtagtggatagaagag 337  Q
    ||||||| |||| |||||||||||  ||| |||||| || ||||||| |||| |||||||||  |||||||||||   || || | ||| ||||||||||    
T  21499601 tataagatgagagatggggtgatgacttaaaatagttgatgatgataaaggtggattccttataatagtaatgagtctaagatagaagtagatagaagag 21499700  T
Q  338 tgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggt-aatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg 436  Q
    ||||  ||||||| |||||| || | ||  |||| |||||||| | ||||||||   |||||| ||| ||||||| |   |||||| |||||| |||| |    
T  21499701 tgtatgaccaaaaggaacaattaaattggggaagtggtttaagatgaatgaagatattaggtgaagagataagaccagcgtaattgaaaataggaaggtg 21499800  T
Q  437 taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaa 500  Q
    || |||||||| | || ||| | |||| ||||||||||||||||||||| ||| ||| ||||||    
T  21499801 taagttaaagtga-ggttaatgctagagataatgataatggtgaggtaaagactttaggttaaa 21499863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 10388782 - 10388655
Alignment:
Q  32 tatcttgtttaggacgatgagtaaacgatgaaacaggttaagtggtaagtaagagttaaagcaacggggaaggtcagagatgatcaaaatagtaaggaaa 131  Q
    |||||| ||||||  |||||||||| |||||| | ||||| || || |||| |||||||||||  ||| |||||||| |||||| | || | | || |||    
T  10388782 tatcttctttagggtgatgagtaaatgatgaagcgggttatgttgtgagtacgagttaaagcattgggtaaggtcagggatgataataacaatgagaaaa 10388683  T
Q  132 tatattaagttagttaaggataagaaga 159  Q
    ||||| |||||| |||||| ||| ||||    
T  10388682 tatatcaagttaattaaggttaataaga 10388655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 337 - 513
Target Start/End: Original strand, 22499208 - 22499384
Alignment:
Q  337 gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg 436  Q
    ||||||| |||||||||| || ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| |    
T  22499208 gtgtagagccaaaatgaaaaagtagaatgatgaagtggtttaaggtaatgaagatgctaggtgaagaaataagacaaaggtaattggaaatagaaaggtg 22499307  T
Q  437 taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgt 513  Q
    || ||||||||||||||||| |||||||||||| ||||||||||  ||| ||  ||||||||| |||||||| ||||    
T  22499308 taagttaaagtaagggataatgttagaaataataataatggtgaaataacgatcttaagttaagatgaatagagtgt 22499384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 340 - 540
Target Start/End: Original strand, 31138608 - 31138808
Alignment:
Q  340 tagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcgtag 439  Q
    ||||||||| |||||||| |||| || ||||| |||||||||||||||||| |||||  ||||||||||||| ||| ||||| |||||| ||||| |||     
T  31138608 tagaaccaacatgaacaagtagagtggtgaagtggtttaaggtaatgaagatgctagtcggagaaataagacgaaggtaatttgaaatataaaggtgtaa 31138707  T
Q  440 gttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaagatgatggatgatgt 539  Q
    ||||||||||||||||   |||||||||||||||||||||| |||| ||  |||||||||||| ||||| ||||| |||| |||||| |||  |||||||    
T  31138708 gttaaagtaagggatactattagaaataatgataatggtgaagtaacgaacttaagttaaaataaatagagtgtgctcgaattaagaggataaatgatgt 31138807  T
Q  540 t 540  Q
    |    
T  31138808 t 31138808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 337 - 570
Target Start/End: Complemental strand, 22562277 - 22562044
Alignment:
Q  337 gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg 436  Q
    |||||||  |||||||||||| ||| ||| ||||| ||||||||||||| |||| | |||||| || |||||||| ||| |||||||||||| ||  | |    
T  22562277 gtgtagattcaaaatgaacaagtaggatggtgaagtggtttaaggtaattaagatgttaggtgaaggaataagacgaaggtaattggaaatataagtgtg 22562178  T
Q  437 taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaagatgatggatga 536  Q
    || ||||||||||||||||| ||||||||||||| ||||||||| |||| ||| |||||| |||||||| |  ||||||||||||||||| ||| ||| |    
T  22562177 taagttaaagtaagggataatgttagaaataatgttaatggtgaagtaacgaccttaagtgaaaatgaacaaagtgtggtcgatttaagaggatagataa 22562078  T
Q  537 tgttgagaaaactaataagacgaattagaacggg 570  Q
    |||| ||| || | |||| | ||| |||||||||    
T  22562077 tgttaagagaattgataaaatgaaatagaacggg 22562044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 337 - 526
Target Start/End: Complemental strand, 8277 - 8088
Alignment:
Q  337 gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg 436  Q
    ||||||| ||||||||||||| || || | ||||| ||||||||||||||| || |||||||| || |||||||| ||  |||||||||||| |||||||    
T  8277 gtgtagagccaaaatgaacaagtaaaacggtgaagtggtttaaggtaatgatgatgctaggtgaaggaataagacgaacgtaattggaaatataaaggcg 8178  T
Q  437 taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga 526  Q
    || |||||||||||||||   |||||||| |||||||||||||| |||| ||| ||| |||||||||||  | ||||||| |||||||||    
T  8177 taagttaaagtaagggatggtgttagaaagaatgataatggtgaagtaacgaccttaggttaaaatgaaatgggtgtggtagatttaaga 8088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 337 - 566
Target Start/End: Original strand, 12347925 - 12348154
Alignment:
Q  337 gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg 436  Q
    ||||||| ||||||||||||| ||| ||| ||||| |||||||||||||||||| | |||| | ||||||||||| ||| |||||  ||||| ||||||     
T  12347925 gtgtagagccaaaatgaacaagtaggatggtgaagtggtttaaggtaatgaagatgttaggcgaagaaataagacgaaggtaattttaaatataaaggca 12348024  T
Q  437 taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaagatgatggatga 536  Q
    || |||||||||||||| |  |||||||||||| ||| |||||| || | ||| |||||||||||||||||| ||| |  | |||||||| ||| |||||    
T  12348025 taagttaaagtaagggacatggttagaaataataatattggtgaagtgacgaccttaagttaaaatgaatagagtgagaccaatttaagaggatagatga 12348124  T
Q  537 tgttgagaaaactaataagacgaattagaa 566  Q
    |||| ||| || | |||||||||| |||||    
T  12348125 tgttaagagaattgataagacgaaatagaa 12348154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 337 - 526
Target Start/End: Original strand, 9694150 - 9694337
Alignment:
Q  337 gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg 436  Q
    ||||||| ||||||| ||||| ||||||| ||||| |||||||||||||||||| |||||||| || ||||||||||| ||||||| ||||| |||||||    
T  9694150 gtgtagagccaaaattaacaagtagaatggtgaagtggtttaaggtaatgaagatgctaggtgaaggaataagacaaacataattgaaaatataaaggcg 9694249  T
Q  437 taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga 526  Q
    ||  ||||||||| ||||   ||| |||| |||| ||||||||| |||| ||  ||| ||||||||||  | || |||||||||||||||    
T  9694250 taaattaaagtaaaggatgttgtttgaaagaatggtaatggtgaagtaacgaacttaggttaaaatga--aatgagtggtcgatttaaga 9694337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 336 - 505
Target Start/End: Original strand, 11801336 - 11801505
Alignment:
Q  336 agtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggc 435  Q
    |||||||| ||||||| ||||| ||||||| ||||| |||||||||||||||||| |||||||| || |||||||| ||  |||||| ||||| ||||||    
T  11801336 agtgtagatccaaaattaacaagtagaatggtgaagtggtttaaggtaatgaagatgctaggtgaaggaataagacgaacgtaattgaaaatataaaggc 11801435  T
Q  436 gtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaa 505  Q
    ||| |||||| |||||||| | |||||||| |  ||||||||||| |||| ||  ||| |||||||||||    
T  11801436 gtaagttaaaataagggatgatgttagaaagatggataatggtgaagtaacgaacttaggttaaaatgaa 11801505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1405 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold1405
Description:

Target: scaffold1405; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 346 - 526
Target Start/End: Complemental strand, 809 - 629
Alignment:
Q  346 caaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcgtaggttaaa 445  Q
    |||||| ||||||||||||| ||||  |||||||||||||||||| |||||||| || |||||||| ||  |||||| ||||| ||||||||| ||||||    
T  809 caaaattaacaaatagaatggtgaaatggtttaaggtaatgaagatgctaggtgaaggaataagacgaacgtaattgcaaatataaaggcgtaagttaaa 710  T
Q  446 gtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga 526  Q
    ||||||||||| |||||||| | |||||||||||| ||||  |  ||| |||||||||||  | |||||||| ||||||||    
T  709 gtaagggataatgttagaaacattgataatggtgaagtaaaaaacttaggttaaaatgaaatgagtgtggtcaatttaaga 629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 337 - 526
Target Start/End: Original strand, 13560527 - 13560714
Alignment:
Q  337 gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg 436  Q
    ||||||| ||||||| ||||| ||||||| ||||| |||||||||||||||||| |||||||| || ||||||||||| ||||||| ||||| |||||||    
T  13560527 gtgtagagccaaaattaacaagtagaatggtgaagtggtttaaggtaatgaagatgctaggtgaaggaataagacaaacataattgaaaatataaaggcg 13560626  T
Q  437 taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga 526  Q
    ||  ||||||||| ||||   ||| |||| |||| ||||||||| |||| ||  ||| ||||||||||  | || |||||||||||||||    
T  13560627 taaattaaagtaaaggatgttgtttgaaagaatggtaatggtgaagtaacgaacttaggttaaaatga--aatgagtggtcgatttaaga 13560714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 337 - 526
Target Start/End: Original strand, 25582447 - 25582636
Alignment:
Q  337 gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg 436  Q
    |||||||  |||||| ||||| |||||||  |||  |||||||||||||||||| |||||||| || ||||| |  || ||||||| ||||| |||||||    
T  25582447 gtgtagagtcaaaattaacaagtagaatggagaaatggtttaaggtaatgaagatgctaggtgaaggaataacatgaacataattgaaaatataaaggcg 25582546  T
Q  437 taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga 526  Q
    || ||||||||||||||||| |||||||| | |||||||| ||| ||||  |  ||| |||||||||||  | ||| |||| ||||||||    
T  25582547 taagttaaagtaagggataatgttagaaacattgataatgatgaagtaacaaacttatgttaaaatgaaatgagtgaggtcaatttaaga 25582636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 386 - 501
Target Start/End: Complemental strand, 10190226 - 10190111
Alignment:
Q  386 gaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaa 485  Q
    ||||| |||||||| ||  ||||||| ||  ||||||||| ||| |||| ||| ||||| |||| |||||  ||||||||||||||||||||||||||||    
T  10190226 gaagatgctaggtgaagggataagacgaatgtaattggaagtaggaaggtgtaagttaacgtaaaggatattgttagaaataatgataatggtgaggtaa 10190127  T
Q  486 ggacattaagttaaaa 501  Q
     ||| |||||||||||    
T  10190126 agactttaagttaaaa 10190111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 23907933 - 23907871
Alignment:
Q  337 gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtg 399  Q
    ||||||| ||||||| ||||| ||||||| ||||| |||||||||||||||||| ||||||||    
T  23907933 gtgtagagccaaaattaacaagtagaatggtgaagtggtttaaggtaatgaagatgctaggtg 23907871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 544
Target Start/End: Complemental strand, 17458779 - 17458702
Alignment:
Q  467 aatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaagatgatggatgatgttgaga 544  Q
    ||||||| |||||| |||| ||| ||| |||||||||||  | ||||||||||||||||| ||| |||||| ||||||    
T  17458779 aatgatattggtgaagtaaagaccttaggttaaaatgaaacgagtgtggtcgatttaagaggatagatgatattgaga 17458702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 526
Target Start/End: Complemental strand, 22924771 - 22924662
Alignment:
Q  417 taattggaaatagaaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggt 516  Q
    |||| ||||||| ||||||||| ||||| ||| ||||||| ||||| |  ||||||| |||||| | || ||| ||| ||| |||||||  | |||||||    
T  22924771 taatcggaaatataaaggcgtaagttaacgtaggggataatgttagtatgaatgatattggtgaagcaacgaccttatgtttaaatgaaatgagtgtggt 22924672  T
Q  517 cgatttaaga 526  Q
    ||||||||||    
T  22924671 cgatttaaga 22924662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 476
Target Start/End: Original strand, 4062 - 4098
Alignment:
Q  440 gttaaagtaagggataacgttagaaataatgataatg 476  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  4062 gttaaagtaagggataatgttagaaataataataatg 4098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1003 times since January 2019
Visitors: 1521