View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0151_1D_low_51 (Length: 211)

Name: NF0151_1D_low_51
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0151_1D_low_51
NF0151_1D_low_51
[»] chr1 (11 HSPs)
chr1 (1-205)||(9299773-9299977)
chr1 (1-205)||(9466958-9467162)
chr1 (4-205)||(9257736-9257936)
chr1 (43-205)||(9364076-9364238)
chr1 (43-205)||(9337217-9337379)
chr1 (43-205)||(9242806-9242968)
chr1 (7-176)||(8962012-8962181)
chr1 (13-176)||(8939085-8939248)
chr1 (13-176)||(8926659-8926822)
chr1 (13-137)||(9438005-9438129)
chr1 (13-137)||(9420922-9421046)
[»] chr3 (1 HSPs)
chr3 (6-205)||(9171176-9171375)
[»] scaffold0690 (1 HSPs)
scaffold0690 (43-203)||(1287-1447)
[»] chr6 (1 HSPs)
chr6 (43-203)||(15910659-15910819)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 9299977 - 9299773
Alignment:
Q  1 tcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9299977 tcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatt 9299878  T
Q  101 tgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgccttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9299877 tgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattctttcatgatcttcgccttt 9299778  T
Q  201 catct 205  Q
    |||||    
T  9299777 catct 9299773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 9466958 - 9467162
Alignment:
Q  1 tcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatt 100  Q
    |||| |||||||||||||||||| |||||  ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9466958 tcagtgttattgagcatcttaacggcaacgagaatttggcttgacaatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatt 9467057  T
Q  101 tgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgccttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  9467058 tgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgccttt 9467157  T
Q  201 catct 205  Q
    |||||    
T  9467158 catct 9467162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 9257736 - 9257936
Alignment:
Q  4 gcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgt 103  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9257736 gcgttattgatcatcttaacagcaactagaatttgacttgataattg-cctttgtaaacagctccttgagctccttctccgatcttatccttaaatttgt 9257834  T
Q  104 ttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcat 203  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9257835 ttgtaattctcttgatgtcagcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattctttcatgatcttcgcctttcat 9257934  T
Q  204 ct 205  Q
    ||    
T  9257935 ct 9257936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 43 - 205
Target Start/End: Complemental strand, 9364238 - 9364076
Alignment:
Q  43 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 142  Q
    ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| || ||||    
T  9364238 gataacttacctttataaacagctccatgagccccttcgcctatcttatctttaaatttatttgtaattctctttaagtctgcataagagaacctagttg 9364139  T
Q  143 gctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatct 205  Q
    |||||||||||   |||||||||||||||||||| ||||||  ||||||||||| ||||||||    
T  9364138 gctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatct 9364076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 43 - 205
Target Start/End: Complemental strand, 9337379 - 9337217
Alignment:
Q  43 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 142  Q
    ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| || ||||    
T  9337379 gataacttacctttataaacagctccatgagccccttcgcctatcttatctttaaatttatttgtaattctctttaagtctgcataagagaacctagttg 9337280  T
Q  143 gctttaaagc-ctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatct 205  Q
    |||||||||| ||| |||||||||||||||||||| ||||||  ||||||||||| ||||||||    
T  9337279 gctttaaagcactg-taatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatct 9337217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 9242806 - 9242968
Alignment:
Q  43 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 142  Q
    |||||||||||||| ||||||||||||||||  ||||| || |||||||| | |||||| |||||||||||||||||||| ||||| ||||| || ||||    
T  9242806 gataatttacctttataaacagctccatgagtcccttcgcctatcttatcttcaaatttatttgtaattctctttatgtctgcataagagaacctagttg 9242905  T
Q  143 gctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatct 205  Q
    |||||||||||   |||||||||||||||||||| ||||||  ||||||||| | ||||||||    
T  9242906 gctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcacttttcatct 9242968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 8962181 - 8962012
Alignment:
Q  7 ttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttg 106  Q
    ||||| |||||||| ||||||||  |||||||||| ||||||||||||||||| |||||||||||||||||||| || | ||| ||||| ||||  |  |    
T  8962181 ttattaagcatcttcacagcaacaagaatttgactcgataatttacctttgtagacagctccatgagctccttcgcccagcttttccttgaattgatcag 8962082  T
Q  107 taattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttc 176  Q
    |||||||||| || || ||||| || ||||| ||||||||| | || | |||||||||||||||||||||    
T  8962081 taattctcttgatatcggcataagaaaatctagttggctttgacgcttcataatccttcaaaaagttttc 8962012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 8939248 - 8939085
Alignment:
Q  13 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 112  Q
    |||||||| || |||||  |||||||||| |||||||||||||| || |||||||||||||||||||| || | ||| || || ||||  | ||||||||    
T  8939248 agcatcttcacggcaacaagaatttgactcgataatttacctttatagacagctccatgagctccttcccctagcttttctttgaattgatctgtaattc 8939149  T
Q  113 tctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttc 176  Q
    |||| || || ||||| || ||||| ||||||||| | || |  ||||||||||||||||||||    
T  8939148 tcttgatatctgcataagaaaatcttgttggctttgacgcttcgtaatccttcaaaaagttttc 8939085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 8926822 - 8926659
Alignment:
Q  13 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 112  Q
    |||||||| ||||||||   ||||||| | |||||||||||||| || |||||||||||||||||||| || | ||| || || || |  |  |||||||    
T  8926822 agcatcttcacagcaaccataatttgattcgataatttacctttatagacagctccatgagctccttcgcctagcttttctttgaactgatccgtaattc 8926723  T
Q  113 tctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttc 176  Q
    |||| || || ||||| || ||||| ||||||||| | || | |||||||||||||||||||||    
T  8926722 tcttgatatctgcataagaaaatctagttggctttgacgcttcataatccttcaaaaagttttc 8926659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 9438005 - 9438129
Alignment:
Q  13 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 112  Q
    |||||||| ||||| ||  |||||| | | ||||||||||||||| |||| || |||||||||||||| || | ||  ||| |||| || |||||||| |    
T  9438005 agcatcttcacagccacaagaatttcattagataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcc 9438104  T
Q  113 tctttatgtcagcataggagaatct 137  Q
    ||||||| |||||||| ||||||||    
T  9438105 tctttatatcagcataagagaatct 9438129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 9420922 - 9421046
Alignment:
Q  13 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 112  Q
    |||||||| ||||| ||  |||||| | | ||||||||||||||| |||| || |||||||||||||| || | ||  ||| |||| || |||||||| |    
T  9420922 agcatcttcacagccacaagaatttcattagataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcc 9421021  T
Q  113 tctttatgtcagcataggagaatct 137  Q
    ||||||| ||| |||| ||||||||    
T  9421022 tctttatatcaacataagagaatct 9421046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 9171375 - 9171176
Alignment:
Q  6 gttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgttt 105  Q
    |||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||    
T  9171375 gttatttagcatcttaacaccaactagaatttggcttgataatttacctttgtaaacagctccatgagctccttcgcctaacttatccttaaatttattt 9171276  T
Q  106 gtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatct 205  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9171275 gtgattctctttatgtcagcataggagaatctggttggctttaaagccttgtaatccttcaaaaagttttcgattcttttatgatcttcgcctttcatct 9171176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 1447 - 1287
Alignment:
Q  43 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 142  Q
    |||||||||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||||||||| | ||| ||||| ||||| || ||||    
T  1447 gataatttacctttataaacagctccatgagccccttcccctatcttatctttaaatttatttgtaattctcttcaagtctgcataagagaacctagttg 1348  T
Q  143 gctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcat 203  Q
    |||||||||||   |||||||||||||||||||| ||||||  ||||||||||||||||||    
T  1347 gctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcctttcat 1287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 15910659 - 15910819
Alignment:
Q  43 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 142  Q
    |||||||||||||| ||||||||||||||||| ||||| || |||||||| |||||||| ||||||| |||||| | ||| ||||| ||||| || ||||    
T  15910659 gataatttacctttataaacagctccatgagccccttcccctatcttatctttaaatttatttgtaaatctcttcaagtctgcataagagaacctagttg 15910758  T
Q  143 gctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcat 203  Q
    |||||||||||   |||||||||||||||||||| ||||||  ||||||||||||||||||    
T  15910759 gctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcctttcat 15910819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1134 times since January 2019
Visitors: 1526