View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_low_54 (Length: 207)
Name: NF0151_1D_low_54
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 37 - 198
Target Start/End: Complemental strand, 26104255 - 26104094
Alignment:
| Q |
37 |
aaatattccaaatacagacatgaggcagagctccacctagttcacctcacagaagataacaataacatagcagttattgcagccctctacaatttgggtg |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26104255 |
aaatattccaaatacagacatgaggcagagctccacctagttcacctcacagaagataacaataacatagcagttattgcagccctctacaatttgggtg |
26104156 |
T |
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| Q |
137 |
atcctgatcctctaatctccaaggtagagttatttaagtcacattcacaattatgttcatat |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26104155 |
atcctgatcctctaatctccaaggtagagttatttaagtcacattcacaattatgttcatat |
26104094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 26091224 - 26091102
Alignment:
| Q |
46 |
aaatacagacatgaggcagagctccacctagttcacctcacagaagataacaataacatagcagttattgcagccctctacaatttgggtgatcctgatc |
145 |
Q |
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|||| ||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||| | ||| ||||| | ||||||| |||||||| |
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| T |
26091224 |
aaatccagacatgacgccgagctccacttagttcacttcacagaagataacaataacatagcagttgtggcacagctctatagattgggtgttcctgatc |
26091125 |
T |
|
| Q |
146 |
ctctaatctccaaggtagagtta |
168 |
Q |
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||||||||||||||||||||||| |
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| T |
26091124 |
ctctaatctccaaggtagagtta |
26091102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 26072158 - 26072041
Alignment:
| Q |
51 |
cagacatgaggcagagctccacctagttcacctcacagaagataacaataacatagcagttattgcagccctctacaatttgggtgatcctgatcctcta |
150 |
Q |
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||||||| | || ||||||||| |||||||| ||||||||||||||||||||||||||||| | ||| ||||| | ||||||| ||||||||||||| |
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| T |
26072158 |
cagacataacgccgagctccacttagttcacttcacagaagataacaataacatagcagttgtggcacagctctatagattgggtgttcctgatcctcta |
26072059 |
T |
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| Q |
151 |
atctccaaggtagagtta |
168 |
Q |
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|||||||||||||||||| |
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| T |
26072058 |
atctccaaggtagagtta |
26072041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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