View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0151_1D_low_58 (Length: 202)

Name: NF0151_1D_low_58
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0151_1D_low_58
NF0151_1D_low_58
[»] chr8 (15 HSPs)
chr8 (1-93)||(15607797-15607889)
chr8 (1-93)||(15639315-15639407)
chr8 (1-91)||(15616147-15616237)
chr8 (1-93)||(15627554-15627646)
chr8 (1-93)||(15651321-15651413)
chr8 (159-202)||(15616034-15616077)
chr8 (159-202)||(15639208-15639251)
chr8 (159-202)||(15651214-15651257)
chr8 (2-93)||(12068524-12068614)
chr8 (159-202)||(15627447-15627490)
chr8 (1-93)||(39465058-39465150)
chr8 (159-202)||(12068678-12068721)
chr8 (159-202)||(15607690-15607733)
chr8 (2-52)||(12064736-12064785)
chr8 (160-202)||(15997065-15997107)
[»] chr1 (1 HSPs)
chr1 (1-82)||(39404205-39404285)
[»] scaffold0095 (1 HSPs)
scaffold0095 (1-93)||(23351-23443)
[»] chr2 (1 HSPs)
chr2 (46-93)||(12082356-12082403)
[»] chr5 (1 HSPs)
chr5 (29-91)||(20149841-20149903)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 15607889 - 15607797
Alignment:
Q  1 gaaatataaaaatcaaccccatgagtatgatctctaatggaaaccagtaaatatgacatccgaaaatgagaatagcatccaactatggctcac 93  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15607889 gaaatataaaactcaaccccatgagtatgatctctaatggaaaccagtaaatatgacatccaaaaatgagaatagcatccaactatggctcac 15607797  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 15639407 - 15639315
Alignment:
Q  1 gaaatataaaaatcaaccccatgagtatgatctctaatggaaaccagtaaatatgacatccgaaaatgagaatagcatccaactatggctcac 93  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15639407 gaaatataaaactcaaccccatgagtatgatctctaatggaaaccagtaaatatgacatccaaaaatgagaatagcatccaactatggctcac 15639315  T

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Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 15616237 - 15616147
Alignment:
Q  1 gaaatataaaaatcaaccccatgagtatgatctctaatggaaaccagtaaatatgacatccgaaaatgagaatagcatccaactatggctc 91  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15616237 gaaatattaaactcaaccccatgagtatgatctctaatggaaaccagtaaatatgacatccgaaaatgagaatagcatccaactatggctc 15616147  T

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Target: chr8; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 15627646 - 15627554
Alignment:
Q  1 gaaatataaaaatcaaccccatgagtatgatctctaatggaaaccagtaaatatgacatccgaaaatgagaatagcatccaactatggctcac 93  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15627646 gaaatataaaactcaaccccatgagtatgacctctaatggaaaccagtaaatatgacatccaaaaatgagaatagcatccaactatggctcac 15627554  T

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Target: chr8; HSP #5
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 15651413 - 15651321
Alignment:
Q  1 gaaatataaaaatcaaccccatgagtatgatctctaatggaaaccagtaaatatgacatccgaaaatgagaatagcatccaactatggctcac 93  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15651413 gaaatataaaactcaaccccatgagtatgacctctaatggaaaccagtaaatatgacatccaaaaatgagaatagcatccaactatggctcac 15651321  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 15616077 - 15616034
Alignment:
Q  159 ctatttttgattcatgtcagaaaatactaattttgtctaagtct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15616077 ctatttttgattcatgtcagaaaatactaattttgtctaagtct 15616034  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 15639251 - 15639208
Alignment:
Q  159 ctatttttgattcatgtcagaaaatactaattttgtctaagtct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15639251 ctatttttgattcatgtcagaaaatactaattttgtctaagtct 15639208  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 15651257 - 15651214
Alignment:
Q  159 ctatttttgattcatgtcagaaaatactaattttgtctaagtct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15651257 ctatttttgattcatgtcagaaaatactaattttgtctaagtct 15651214  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 12068524 - 12068614
Alignment:
Q  2 aaatataaaaatcaaccccatgagtatgatctctaatggaaaccagtaaatatgacatccgaaaatgagaatagcatccaactatggctcac 93  Q
    |||||||||| |||| || |||| ||||||||||||| ||||| ||||||||||||||   |||||||||||||||| ||| ||| ||||||    
T  12068524 aaatataaaactcaaacc-atgattatgatctctaatagaaactagtaaatatgacattgaaaaatgagaatagcattcaaatatagctcac 12068614  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 15627490 - 15627447
Alignment:
Q  159 ctatttttgattcatgtcagaaaatactaattttgtctaagtct 202  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  15627490 ctatttttgattcatgtcagaaaatactaattttgactaagtct 15627447  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 39465150 - 39465058
Alignment:
Q  1 gaaatataaaaatcaaccccatgagtatgatctctaatggaaacca-gtaaatatgacatccgaaaatgagaatagcatccaactatggctcac 93  Q
    |||||||||||  |||||| |||||| ||  ||||||| |||| || ||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  39465150 gaaatataaaacacaaccc-atgagtctggcctctaattgaaaacatgtaaatatgacatccaaaaatgagaatagcatccaaatatagctcac 39465058  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 12068678 - 12068721
Alignment:
Q  159 ctatttttgattcatgtcagaaaatactaattttgtctaagtct 202  Q
    |||||||| ||||||||||||||||||||||||||| |||||||    
T  12068678 ctattttttattcatgtcagaaaatactaattttgtgtaagtct 12068721  T

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Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 15607733 - 15607690
Alignment:
Q  159 ctatttttgattcatgtcagaaaatactaattttgtctaagtct 202  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  15607733 ctatttttgattcatgtcagaaaattctaattttctctaagtct 15607690  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 12064736 - 12064785
Alignment:
Q  2 aaatataaaaatcaaccccatgagtatgatctctaatggaaaccagtaaat 52  Q
    |||||||||| ||||||| |||||||||||||||| | |||||||||||||    
T  12064736 aaatataaaactcaaccc-atgagtatgatctctatttgaaaccagtaaat 12064785  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 15997065 - 15997107
Alignment:
Q  160 tatttttgattcatgtcagaaaatactaattttgtctaagtct 202  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||    
T  15997065 tatttttgattcaggtcagaaaatacaaattttgtccaagtct 15997107  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 39404205 - 39404285
Alignment:
Q  1 gaaatataaaaatcaaccccatgagtatgatctctaatggaaaccagtaaatatgacatccgaaaatgagaatagcatccaa 82  Q
    ||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||   ||||||||||||||||||||    
T  39404205 gaaatataaaactcaaccc-atgagtatgatctgtaattgaaaccagtaaatatgacatataaaaatgagaatagcatccaa 39404285  T

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Target: scaffold0095 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 23351 - 23443
Alignment:
Q  1 gaaatataaaaatcaaccccatgagtatgatctctaatggaaacca-gtaaatatgacatccgaaaatgagaatagcatccaactatggctcac 93  Q
    |||||||||||  |||||| |||||| ||  ||||||| |||| || ||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  23351 gaaatataaaacacaaccc-atgagtctggcctctaattgaaaacatgtaaatatgacatccaaaaatgagaatagcatccaaatatagctcac 23443  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 12082403 - 12082356
Alignment:
Q  46 agtaaatatgacatccgaaaatgagaatagcatccaactatggctcac 93  Q
    |||||| ||||||||| |||||||||||||||||||| ||| ||||||    
T  12082403 agtaaacatgacatccaaaaatgagaatagcatccaaatatagctcac 12082356  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 20149903 - 20149841
Alignment:
Q  29 gatctctaatggaaaccagtaaatatgacatccgaaaatgagaatagcatccaactatggctc 91  Q
    |||||||||| ||||| |||||||||||||||| ||  ||| |||||||||||| ||| ||||    
T  20149903 gatctctaattgaaacaagtaaatatgacatccaaatgtgaaaatagcatccaaatatagctc 20149841  T

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