View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_low_7 (Length: 506)
Name: NF0151_1D_low_7
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_low_7 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 133 - 506
Target Start/End: Complemental strand, 41717118 - 41716745
Alignment:
| Q |
133 |
actttggatggagttgtgccccatgaaatgtatttaaagccatggttgtaggttgcaatgtggagttgtgatttgtcttcatgtcatatgatttgagtgg |
232 |
Q |
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| T |
41717118 |
actttggatggagttgtgccccataaaatgtatttaaagccatggttgaaggttgcaatgtggagttgtgatttgtcttcatgtcatatgatttgagtgg |
41717019 |
T |
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| Q |
233 |
acaaacattgaagaggagcctagaacaaagattttgaagtgtttttcttgtataagggattattgttacttattgttgaatttgttggagtaaattaaaa |
332 |
Q |
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| T |
41717018 |
acaaacattgaagaggagcctagaacaaagattttgaagtgtttttcttgtataagggattattgttacttattgttgaatttgttggagtaaattaaaa |
41716919 |
T |
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| Q |
333 |
tagtaaaaactcagtgttattgttttaagattattgttcttgattcctgagtgtgatgaaattctatatatttttaatttgtgatagtggatactatgca |
432 |
Q |
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| T |
41716918 |
tagtaaaaacgcagtgttattgttttaagattattgttcttgattcctgagtgtgatgaaattctacatatttttaatttgtgatagtggatactatgca |
41716819 |
T |
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| Q |
433 |
tggttcaatttgttgttgattgtttttataggaacaaatggcaactcaaaacgaagcaaagaggaaaaagtttg |
506 |
Q |
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| T |
41716818 |
tggttcaatttgttgttgattgtttttataggaacaaatggcaacacaaaacgaaccaaagaggaaaaagtttg |
41716745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 415 - 502
Target Start/End: Complemental strand, 41707033 - 41706946
Alignment:
| Q |
415 |
gatagtggatactatgcatggttcaatttgttgttgattgtttttataggaacaaatggcaactcaaaacgaagcaaagaggaaaaag |
502 |
Q |
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| T |
41707033 |
gatagtggataatatgcatggttcaatttgttgttgattgtttctataggaacaaatggcaacacaatacacagcaaagagaaaaaag |
41706946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 41665794 - 41665733
Alignment:
| Q |
441 |
tttgttgttgattgtttttataggaacaaatggcaactcaaaacgaagcaaagaggaaaaag |
502 |
Q |
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| T |
41665794 |
tttgttgttgattgttttggtaggaacaaatggcaacacaaaacaaagcaaagagaaaaaag |
41665733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 41649090 - 41648995
Alignment:
| Q |
295 |
ttgttacttattgttgaatttgttggagtaaattaaaatagtaaaaactcagtgttattgttttaagattattgttcttgattcctgagtgtgatgaaat |
394 |
Q |
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| T |
41649090 |
ttgttacttattgttgattttgttggg-----ttaaaatagcgaaaactcagtcttattgttttaagattattgttcatgttgcatgagtgttatgaaat |
41648996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 501
Target Start/End: Complemental strand, 41648899 - 41648834
Alignment:
| Q |
436 |
ttcaatttgttgttgattgtttttataggaacaaatggcaactcaaaacgaagcaaagaggaaaaa |
501 |
Q |
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| T |
41648899 |
ttcaatttgttgtcaattgtttttgtagggacaaatgacaactcaaaacaaagcaaagagaaaaaa |
41648834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 41649907 - 41649764
Alignment:
| Q |
139 |
gatggagttgtgccccatgaaatgtatttaaagccatggttgtaggttgcaatgtggagttgtgatttgtcttcatgtcatatga--tttgagtggacaa |
236 |
Q |
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| T |
41649907 |
gatggagttgagccccgcaaaatgtatttaaaatcatggttgtctatttcaatgtgaagttgtgatatgttttaatgtctaatgatttttgagtccacaa |
41649808 |
T |
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| Q |
237 |
acattgaagaggagcctagaacaaagattttgaagtgtttttct |
280 |
Q |
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| T |
41649807 |
acattgaagaggagattaaacaaaagactttgaagtgtttttct |
41649764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 494
Target Start/End: Complemental strand, 41657034 - 41656981
Alignment:
| Q |
441 |
tttgttgttgattgtttttataggaacaaatggcaactcaaaacgaagcaaaga |
494 |
Q |
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| T |
41657034 |
tttgttcttgactgtttttgtaggaacaaatggcaagccaaaacaaagcaaaga |
41656981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 500
Target Start/End: Original strand, 2440073 - 2440132
Alignment:
| Q |
441 |
tttgttgttgattgtttttataggaacaaatggcaactcaaaacgaagcaaagaggaaaa |
500 |
Q |
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| T |
2440073 |
tttgctgttgactgtttttgtaggaacaaatggcaaaacaaaacaatgcaaagaggaaaa |
2440132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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