View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0152-INSERTION1 (Length: 644)

Name: NF0152-INSERTION1
Description: NF0152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0152-INSERTION1
NF0152-INSERTION1
[»] chr5 (1 HSPs)
chr5 (8-640)||(6337402-6338034)


Alignment Details
Target: chr5 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 8 - 640
Target Start/End: Original strand, 6337402 - 6338034
Alignment:
Q  8 gtacacataaaaacaagaaccatatacaacaaagaacattgttgaaacaacaattgggttatagtcagcaatgcaaattgtgaagaatggttgttgtctc 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6337402 gtacacataaaaacaagaaccatatacaacaaaggacattgttgaaacaacaattgggttatagtcagcaatgcaaattgtgaagaatggttgttgtctc 6337501  T
Q  108 cctttgtatgaacaaaaacgaggagcaggagcggtttagggatcaaaagttgaaaagtatgaatacgagtggggaaggaaatgggtaccacaaacaatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6337502 cctttgtatgaacaaaaacgaggagcaggagcggtttagggatcaaaagttgaaaagtatgaatacgagtggggaaggaaatgggtaccacaaacaatct 6337601  T
Q  208 caccctctatgtcagacaagataaaattaactttgatttcagcttcatcaccaagcaccgtccatattcaactcatactatcatctacattaaaccactt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6337602 caccctctatgtcagacaagataaaattaactttgatttcagcttcatcaccaagcaccgtccatattcaactcatactatcatctacattaaatcactt 6337701  T
Q  308 ttcacaccccacttcttaattattgtctttgaatttgaaataattttaaggtagagcccacataggatctaaggggtgggttgatgttgtcccaatctta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6337702 ttcacaccccacttcttaattattgtctttgaatttgaaataattttaaggtagagcccacataggatctaaggggtgggttgatgttgtctcaatctta 6337801  T
Q  408 agtggttggcttaggccattccatttgaaacattaccactagggaagcacgtggagagaagnnnnnnnttatgaagccttggcggtgatttttacaaaca 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  6337802 agtggttggcttaggccattccatttgaaacattaccactagggaagcacgtggagagaagaaaaaaattatgaagccttggcggtgatttttacaaaca 6337901  T
Q  508 acacatgaaatggagagatagatagatgacaaggtttaaattgtttggttgagaattaaccatgaaaggatcgatggatgtggcatatgcggcgcagcag 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6337902 acacatgaaatggagagatagatagatgacaaggtttaaattgtttggttgagaattaaccatgaaaggatcgatggatgtggcatatgcggcgcagcag 6338001  T
Q  608 ttaccgtttgggggtgtattctttttctccata 640  Q
    |||||||||||||||||||||||||||||||||    
T  6338002 ttaccgtttgggggtgtattctttttctccata 6338034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 555 times since January 2019
Visitors: 2229