View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0152-INSERTION11 (Length: 230)
Name: NF0152-INSERTION11
Description: NF0152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0152-INSERTION11 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 21468403 - 21468625
Alignment:
| Q |
8 |
cttcttatgtatgattacatgccaaatgggagtcttggaagtttacttcatgaaggaagtggtaattgcttggagtggcacattcgattcaagataatac |
107 |
Q |
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| T |
21468403 |
cttcttatgtatgattacatgccaaatgggagtcttggaagtttacttcatgaaggaagcggtaattgcttggaatggcatattagattcaagataatac |
21468502 |
T |
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| Q |
108 |
taggagcagctcaaggtgtggcttatttacaccatgactgtgctcctcctattgttcacagagatattaaggccaacaacatcctcataggtcttgaatt |
207 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21468503 |
taggagcagctcaaggcgtggcttatttacaccatgattgtgctcctcctattgttcacagagatattaaggccaacaacatcctcataggtcttgaatt |
21468602 |
T |
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| Q |
208 |
tgaaccatacataactgattttg |
230 |
Q |
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||||||||||||| ||||||||| |
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| T |
21468603 |
tgaaccatacatagctgattttg |
21468625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 20132513 - 20132608
Alignment:
| Q |
135 |
tacaccatgactgtgctcctcctattgttcacagagatattaaggccaacaacatcctcataggtcttgaatttgaaccatacataactgattttg |
230 |
Q |
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|||| |||||||||| ||||||||| || |||||||||||||| ||||| |||||| | || || |||||||||||||| || || ||||||||| |
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| T |
20132513 |
tacatcatgactgtgttcctcctatagtccacagagatattaaagccaataacatcttgattggacttgaatttgaaccttatattgctgattttg |
20132608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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