View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0152-INSERTION6 (Length: 539)
Name: NF0152-INSERTION6
Description: NF0152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0152-INSERTION6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 535
Target Start/End: Original strand, 4382498 - 4383012
Alignment:
| Q |
8 |
ctgcatatatcacacaatgtccaattcaacctggacatagttatacatacaatttcaccattactggtcaaagaggaacacttctttggcatgcacatgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4382498 |
ctgcatatatcacacaatgtccaattcaacctggacatagttatacatacaatttcaccattactggtcaaagaggaacacttctttggcatgcacatgt |
4382597 |
T |
|
| Q |
108 |
taattggctaagatcaactgtccatggtgccattgttattttaccaaagaaaggtgttccttatcctttcccaaagccagatgatgaattggttttggta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4382598 |
taattggctaagatcaactgtccatggtgccattgttattttaccaaagaaaggtgttccttatcctttcccaaagccagatgatgaattggttttggta |
4382697 |
T |
|
| Q |
208 |
ttaggtaagtccaaacacacnnnnnnnccttttattaattagttcgattttgatacattatccgtcaatgtaaaaacattacatcatcaacaaattacaa |
307 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| ||||||| ||||| | |
|
|
| T |
4382698 |
ttaggtaactccaaacaca---aaaaaccttttattaattagttcaattttgatacattattcatcaatgtaaaaacattacactatcaacacattacga |
4382794 |
T |
|
| Q |
308 |
tcaatcatatttgtgtttatttatgttgaatgatctgacgattatgattgattaccggtataacaagatatttacattagtgttatatatgaattaaatg |
407 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4382795 |
tcaatcatatttg----------tgttgaatgatctgacgattatgattgattaccggtataacaagatatttacattagagttatatatgaattaaatg |
4382884 |
T |
|
| Q |
408 |
ttttgtttattggtttttcaatagcataaattggaattctaatttgtgtttataatggtgatgattgaaaaattgtaggagagtggtggaaatctgatac |
507 |
Q |
| |
|
|||||||| | || |||||||| ||| ||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4382885 |
ttttgtttgtctgtctttcaataacattaattggaattctaataaatgtttatgatggtgataattgaaaaattataggagagtggtggaaatctgatac |
4382984 |
T |
|
| Q |
508 |
tgaagctgttatcaatgaagctctaaaa |
535 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4382985 |
tgaagctgttatcaatgaagctctaaaa |
4383012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 35053965 - 35054029
Alignment:
| Q |
55 |
tacaatttcaccattactggtcaaagaggaacacttctttggcatgcacatgttaattggctaag |
119 |
Q |
| |
|
||||| || |||||||| ||||||||||| |||||||| |||||||||||| | | ||||||||| |
|
|
| T |
35053965 |
tacaactttaccattacaggtcaaagaggcacacttctatggcatgcacatatcacttggctaag |
35054029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 35070277 - 35070341
Alignment:
| Q |
55 |
tacaatttcaccattactggtcaaagaggaacacttctttggcatgcacatgttaattggctaag |
119 |
Q |
| |
|
||||| || |||||||| ||||||||||| |||||||| |||||||||||| | | ||||||||| |
|
|
| T |
35070277 |
tacaactttaccattacaggtcaaagaggcacacttctatggcatgcacatatcacttggctaag |
35070341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 22601890 - 22601939
Alignment:
| Q |
52 |
acatacaatttcaccattactggtcaaagaggaacacttctttggcatgc |
101 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
22601890 |
acatacaacttcaccattactggacaaagaggaaccctattttggcatgc |
22601939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 618 times since January 2019
Visitors: 2233