View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0152-INSERTION7 (Length: 530)
Name: NF0152-INSERTION7
Description: NF0152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0152-INSERTION7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Original strand, 3292549 - 3293071
Alignment:
| Q |
8 |
catgtcacacctatgcatttgtaccttaaaatatgcaaattaggcaaacggctccgcgtgtcaagatcaggatcatacaactcggctgatgagatccctc |
107 |
Q |
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| T |
3292549 |
catgtcacacctatgcatttgtaccttaaaatatgcaaattaggcaaacggctccacgtgtcaaaatcaggatcatacaactcggctgatgagatccctc |
3292648 |
T |
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| Q |
108 |
ttgcacttgccagcctggacttccctccagccacatagattttgttgtcacaaacagtgcaagcaaaatcataccttgcaacacatagtggtgcacaatt |
207 |
Q |
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| T |
3292649 |
ttgcacttgccagcctggacttccctccagccacatagattttgttgtcacaaacagtgcaagcaaaatcataccttgcaacacatagtggtgcacaatt |
3292748 |
T |
|
| Q |
208 |
gaaccattgattagttcttatgttgtaacgtagtacatttggtacaacttttataccctcatcaagaaattcagctgagtcatcattaacatgaactttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3292749 |
gaaccattgattagttcttatgttgtaacgtagtacatttggtacaacttttataccctcatcaagaaattcagctgagtcatcattaacatgaactttt |
3292848 |
T |
|
| Q |
308 |
tctttgttacaaatttggccaccaattatataaataaagtctcctaatgaaatcatggaaaagccctttaatacttggtcatcaactaggccagggattc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3292849 |
tctttgttacaaatttggccaccaattatataaataaagtctcccaatgaaatcatggaaaagccctttaatacttggtcatcaactaggccaggaattc |
3292948 |
T |
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| Q |
408 |
taccaacatttgtccatgtgttcatggatggataataaaggtgaattgaattaggaagtgtcacatttggagttggttctctaggacagaaaattgtgac |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3292949 |
taccaacatttgtccatgtgttcatggatggataataaaggtgaattgaattaggaagtgtcacatttggagttggttctctaggacagaaaattgtgac |
3293048 |
T |
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| Q |
508 |
cataacatagtttgaaagatgat |
530 |
Q |
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|||||||||||||||| |||||| |
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| T |
3293049 |
cataacatagtttgaaggatgat |
3293071 |
T |
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