View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0152-INSERTION9 (Length: 716)
Name: NF0152-INSERTION9
Description: NF0152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0152-INSERTION9 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 237 - 716
Target Start/End: Complemental strand, 11846018 - 11845540
Alignment:
| Q |
237 |
cattgcactatctgatattcaaaggctaagcaaactcttgtttataatacacgttacaaaatcattcatacgaactattttaattcaataatatgcaaaa |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
11846018 |
cattgcactatctgatattcaaaggctaagcaaactcttgtttataatacacgttacaaaatcattcatacgaactattttaattcaataacatgcataa |
11845919 |
T |
|
| Q |
337 |
cctccgagtctgtggagtatgtttgactgtcaacaatttgcaatgaactcgacgtagaaaactcatcccaaggttggtgctcttcaatttcaggaagctc |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11845918 |
cctccgagtctgtggagtatgtttgactgtcaacaatttgcaatgaactcgacgtagaaaactcatcccaaggtcggtgctcttcaatttcaggaagctc |
11845819 |
T |
|
| Q |
437 |
aatttcctcatggttttgctgtgtactaagtttcttattcaatcccctgatcccttccaattttaatgtaacttctttcattgttggtcgttttcttccg |
536 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11845818 |
aatttcctcatggttttgctgtgcactaagtttcctattcaatcccctgatcccttccaattttaatgtaacttctttcatagttggtcgttttcttcca |
11845719 |
T |
|
| Q |
537 |
ttcaactctaagcatctatacgcaagatttgcaactgcaacgacatgttctttctccccttcttttgtgacccttttgtcaataatgtcaaacaacatat |
636 |
Q |
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| T |
11845718 |
ttcaactctaagcatctatacgcaagatttgcaactgcaacgacatgttctttctccccttcttttgtgacccttttgtcaataatgtcaaacaacatat |
11845619 |
T |
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| Q |
637 |
tctcatctatacactcaataaaataagaagctaaactttggtattcgccagatcctatagaaggataccggcttcttacc |
716 |
Q |
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| T |
11845618 |
tctcatctatacactcaataaaataggaagctaaactttggtattcgccagatcctatag-aggataccggcttcttacc |
11845540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 294 - 694
Target Start/End: Complemental strand, 11850690 - 11850290
Alignment:
| Q |
294 |
aaaatcattcatacgaactattttaattcaataatatgcaaaacctccgagtctgtggagtatgtttgactgtcaacaatttgcaatgaactcgacgtag |
393 |
Q |
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|||||||| || || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11850690 |
aaaatcatacaaaccaactattttaattcaataatatgcataacctccgagtctgtggagtatgtttgactgtcaacaatttgcaatgaactcgacgtag |
11850591 |
T |
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| Q |
394 |
aaaactcatcccaaggttggtgctcttcaatttcaggaagctcaatttcctcatggttttgctgtgtactaagtttcttattcaatcccctgatcccttc |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11850590 |
aaaactcatcccaaggttggtgctcttcaatttcaggaagctcaatttcctcatggttttgctgtgcactaagtttcttattcaatcccctgatcccttc |
11850491 |
T |
|
| Q |
494 |
caattttaatgtaacttctttcattgttggtcgttttcttccgttcaactctaagcatctatacgcaagatttgcaactgcaacgacatgttctttctcc |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11850490 |
caattttaatgtaacttctttcattgttggtcgttttcttccgttcaactctaagcatctatacgcaagatttgcaactgcaacgacatgttctttctcc |
11850391 |
T |
|
| Q |
594 |
ccttcttttgtgacccttttgtcaataatgtcaaacaacatattctcatctatacactcaataaaataagaagctaaactttggtattcgccagatccta |
693 |
Q |
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|||||||| || ||||||||||||||||| ||||||||||||| ||| |||||||||| ||||||||| ||||||||| |||||||||| |||||||||| |
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| T |
11850390 |
ccttctttcgtaacccttttgtcaataatatcaaacaacatatcctcctctatacactgaataaaataggaagctaaattttggtattccccagatccta |
11850291 |
T |
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| Q |
694 |
t |
694 |
Q |
| |
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| T |
11850290 |
t |
11850290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 11850902 - 11850794
Alignment:
| Q |
134 |
ttcttaaccaacataagtacattcttgaaacatacaa--catttttatataggtgtaagaataagcacaagcataaattaacttgtaacaaaattcagtg |
231 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| | | |||||||||||||| ||||| ||||| |
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| T |
11850902 |
ttcttaaccaacataagtacattcttgaaacatataaaacatttttatataggtgtaagaataagcacaggtaaaaattaacttgtaagaaaatccagtg |
11850803 |
T |
|
| Q |
232 |
taattcatt |
240 |
Q |
| |
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||||||||| |
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| T |
11850802 |
taattcatt |
11850794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 11851051 - 11850956
Alignment:
| Q |
27 |
ggttgatgatcttgttatagttaggatcgaataataatcacattttatctaaactctagagaacatggcaatctcgttttcccatcaaagatctcgt |
123 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||| | ||||||| |||||||||||||||| |
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| T |
11851051 |
ggttaatgatcttgttatagttagaatcgaataataatcacgttttatctaaaccctagagaacattgcagtttcgtttt-ccatcaaagatctcgt |
11850956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 11850771 - 11850713
Alignment:
| Q |
239 |
ttgcactatctgatattcaaaggctaagcaaactcttgtttataatacacgttacaaaa |
297 |
Q |
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|||| |||| |||||||||||| ||||| |||||||||||||||||||| ||||||||| |
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| T |
11850771 |
ttgccctatatgatattcaaagcctaagaaaactcttgtttataatacatgttacaaaa |
11850713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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