View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154-Insertion-1 (Length: 1036)
Name: NF0154-Insertion-1
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154-Insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 929; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 929; E-Value: 0
Query Start/End: Original strand, 10 - 1034
Target Start/End: Original strand, 41447826 - 41448856
Alignment:
| Q |
10 |
tcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgtttacttttcaagtgatattcatcaaagttttaactggcagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41447826 |
tcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgcttactttacaagtgatattcatcaaagttttaactggcagg |
41447925 |
T |
|
| Q |
110 |
gttaaattcaaacaataaggtttccgttgtatcagtacctcaaaccgctcaaactgagggtgagattttgcagtcatccaatttaaagagctatacctat |
209 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41447926 |
gttaaattcaaacaataaggtttccgctgtatcagtacctcaaaccgctcaaactgagggtgagattttgcagtcatccaatttaaagagctatacctat |
41448025 |
T |
|
| Q |
210 |
gcagaactctggacagccactggaaattttcgtccacgtaatgtgttaggagaaggtggttttggatcagtttttaagggttggattgatgagaattcat |
309 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448026 |
gcagaactgtggacagccaccggaaattttcgtccacgtaatgtgttaggagaaggtgatttttgatcagtttttaagggttggattgatgagaattcat |
41448125 |
T |
|
| Q |
310 |
tggctgctgccaaacctggcactggcattgttattgctatcaaaagacttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaattaa |
409 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448126 |
tggctgctgccaaacctggcactagcattgttattgctatcaaaagacttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaattaa |
41448225 |
T |
|
| Q |
410 |
tctacttgattaaatcatttgctcatcataattaagaagcaaatagtttctctgttacattgttaaataattcaaaaaagaaagtctcaatttgtttagt |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41448226 |
tctacttgattaaatcatttgctcatcataattaagaagcaaatagtttctctgttacattgttaaataattcaaaaaataaagtctcaatttgtttagt |
41448325 |
T |
|
| Q |
510 |
ctcattcttgttcttctaacctcactgaattagtataaatccctacatttaaaaccacagtttcaataatactatgttactatgttagtaattagttatg |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448326 |
ctcattcttgttcttctaacctcactgaattagtataaatccctacatttaaaaccacagtttcaataatactatgttactatgttagtaattagttatg |
41448425 |
T |
|
| Q |
610 |
attggaaaactaggagggtttatttttgggtgtgcagacaatacaagtttgccttactatgtttttgttttcacttctaggctgaagtcaactaccttgg |
709 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448426 |
attggaaaactaggtgggtttattttcgggtgtgcagacaatacaagtttgccttactatgtttttgttttcacttctaggctgaagtcaactaccttgg |
41448525 |
T |
|
| Q |
710 |
aaggttttctcatcctcatttagtgagattgatcggttattgccttgaaaatgaacaccgtcttctagtctatgagtttatggccaatggaagcttggag |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448526 |
aaggttttctcatcctcatttagtgagattgatcggttattgccttgaaaatgaacaccgtcttctagtctatgagtttatggccaatggaagcttggag |
41448625 |
T |
|
| Q |
810 |
aatcacttgtttagaagttagttattcttcaccttccatcttttcccttagtttttaatttc---agaagtttgtttaacattggcaatgttatagaaac |
906 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448626 |
aatcacttgtttagaagttagttattcttcatttcccatcttttcccttagtttttaatttcagaagaagtttgtttaacattggcaatgttatagaaac |
41448725 |
T |
|
| Q |
907 |
agaaggctcatattttcaacctctctcttggagcctctgtctgaaggttgctcttggtgctgccaaagggcttgcatttcagcacagtgaag-catagtg |
1005 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
41448726 |
agaaggctcatattttcaacctctctctcggagcctctgtctgaaggttgctcttggtgctgccaaagggcttgcgtttcagcacagtgaagccatagtg |
41448825 |
T |
|
| Q |
1006 |
atacat-gagatttt-agacttcaaatgtct |
1034 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| |
|
|
| T |
41448826 |
atacatggagattttaagacttcaaatgtct |
41448856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 552 - 995
Target Start/End: Original strand, 41458707 - 41459160
Alignment:
| Q |
552 |
ctacatttaaaaccacagtttcaataatactatgttactatgttagtaattagttatgattggaaaactaggagggtttatttttgggtgtgcagacaat |
651 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41458707 |
ctacatttaaaaccacagtttcagtaatactatgttactatgttagtaattagttatgattggaaaactaggagggtttatttttgggtgtgcagacaat |
41458806 |
T |
|
| Q |
652 |
acaagtttgccttactatgtttttgttttcacttctaggctgaagtcaactaccttggaaggttttctcatcctcatttagtgagattgatcggttattg |
751 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41458807 |
acaagtttgtcttactatgtttctgttttcacttctaggctgaagtaaactaccatggaaggttttctcatcctcatttagtgagattgatcggttattg |
41458906 |
T |
|
| Q |
752 |
ccttgaaaatgaacaccgtcttctagtctatgagtttatggccaatggaagcttggagaatcacttgtttagaagttagttattcttcaccttccatctt |
851 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| || ||| ||||||| ||| | ||||||| |
|
|
| T |
41458907 |
ccttgaaaatgaacaccgtcttctcgtctatgagtttatgcctcgtggaagcttggagaatcacttgttcaggagtgagttattattcctttcccatctt |
41459006 |
T |
|
| Q |
852 |
ttcccttagtttttaatttc---agaagtttgtttaacattggcaatgtta-------tagaaacagaaggctcatattttcaacctctctcttggagcc |
941 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||||| ||||| ||| | ||||||| ||| |||||||| |||||||| || ||||||| |
|
|
| T |
41459007 |
ttcccttagcttttaacttcggaagaagtttgtttaacattagcaatattattgaaatttgaaacaggaggatcatatttccaacctctttcatggagcc |
41459106 |
T |
|
| Q |
942 |
tctgtctgaaggttgctcttggtgctgccaaagggcttgcatttcagcacagtg |
995 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
41459107 |
tccgtctgaaggttgctcttgacgctgccaaagggcttgcatttctgcacagtg |
41459160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 460
Target Start/End: Original strand, 41458199 - 41458646
Alignment:
| Q |
11 |
cgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgt---ttacttttcaagtgatattcatcaaagttttaactggca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
41458199 |
cgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaata-atgtatattacttttcatgtgatattcatgaatgttttaactggca |
41458297 |
T |
|
| Q |
108 |
gggttaaattcaaacaataaggtttccgttgtatcagtacctcaaaccgctcaaactgagggtgagattttgcagtcatccaatttaaagagctatacct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
41458298 |
gggttaaattcaaacaataaggtttccgctgtatcagtgcctccgaccgctcaaagtgagggtgagatcttgccgtcatccactttaaagagctatacct |
41458397 |
T |
|
| Q |
208 |
atgcagaactctggacagccactggaaattttcgtccacgtaatgtgttaggagaaggtggttttggatcagtttttaagggttggattgatgagaattc |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41458398 |
atgcagaactctcgacagccactggaaatttttttccagacaatgtgttaggagaaggtagttttggagcagtttttaagggttggattgatgagaattc |
41458497 |
T |
|
| Q |
308 |
attggctgctgccaaacctggcactggcattgttattgctatcaaaagacttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaatt |
407 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||| | | ||||||||||||||||||| |||||||| |
|
|
| T |
41458498 |
attttctgctgccaaacctggcattggcattgttattgctatcaaaagccttaatcaagaaagcttccgaagtcacagggagtggttggttagtttaata |
41458597 |
T |
|
| Q |
408 |
aatctacttgattaaatcatttgctcatcataattaagaagcaaatagtttct |
460 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
41458598 |
----tacttgtttaaatcatttgcttttgataattaagaagcagatagtttct |
41458646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 627 - 996
Target Start/End: Original strand, 41442011 - 41442379
Alignment:
| Q |
627 |
gtttatttttgggtgtgcagacaatacaagtttgccttactatgtttttgttttcacttctaggctgaagtcaactaccttggaaggttttctcatcctc |
726 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
41442011 |
gtttatgtttgggattgcagacaatacatgtttgccttaatatgtttt-gttttcacttttaggctgaagtcaactatcttggacagttttctcatcctc |
41442109 |
T |
|
| Q |
727 |
atttagtgagattgatcggttattgccttgaaaatgaacaccgtcttctagtctatgagtttatggccaatggaagcttggagaatcacttgtttagaag |
826 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| || || |
|
|
| T |
41442110 |
atttagtgagattgatcggttattgccttgaagatgaacaccgtcttctcgtctatgagtttatgcctcgtggaagcttggagaatcacttgttcaggag |
41442209 |
T |
|
| Q |
827 |
ttagttattcttcaccttccatcttttcccttagtttttaatttc---agaagtttgtttaacattggcaatgtta-------tagaaacagaaggctca |
916 |
Q |
| |
|
| ||||||| | |||||||||||||||||||| ||| || ||||||||||||||| ||||| | | | ||||||| ||| ||| |
|
|
| T |
41442210 |
taagttattat----------tcttttcccttagtttttaacttcggaaggagtttgtttaacattagcaatatcattgaaatttgaaacaggaggatca |
41442299 |
T |
|
| Q |
917 |
tattttcaacctctctcttggagcctctgtctgaaggttgctcttggtgctgccaaagggcttgcatttcagcacagtga |
996 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
41442300 |
tattttcaacctctttcatggagccttcgtctgaaggttgctcttgacgctgccaaagggcttgcatttctgcacagtga |
41442379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 165 - 406
Target Start/End: Original strand, 41441573 - 41441814
Alignment:
| Q |
165 |
gagggtgagattttgcagtcatccaatttaaagagctatacctatgcagaactctggacagccactggaaattttcgtccacgtaatgtgttaggagaag |
264 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||||||||||| || ||||| | | || ||| |||||||||| || || |||||||||||||| |
|
|
| T |
41441573 |
gagggcgagatcttgcagtcatcaaatttaaagagctataccttagctgaacttaagtcggctactagaaattttcgaccggatagtgtgttaggagaag |
41441672 |
T |
|
| Q |
265 |
gtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatcaaaagacttcatca |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| || |||||||| ||||||||| | ||||||||| |||| |
|
|
| T |
41441673 |
gtggttttggatcagtttttaagggttggatcgatgagaatacattggttgctgccaaaccgggtactggcatagttattgctgttaaaagacttaatca |
41441772 |
T |
|
| Q |
365 |
agatggcttacaaggtcacagggagtggttggtgagtttaat |
406 |
Q |
| |
|
||| |||| || ||||||||||||||||||||||||||||| |
|
|
| T |
41441773 |
agaaagcttccagggtcacagggagtggttggtgagtttaat |
41441814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 41441359 - 41441431
Alignment:
| Q |
17 |
atttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgtttacttttcaagtgatattcat |
90 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||||||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
41441359 |
atttcattgtataaacacaattgaagatccggtttgatagctcaatgtatg-ttacatttcatgtgatattcat |
41441431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 16418610 - 16418518
Alignment:
| Q |
25 |
gtatgaacacacttgaagatctagtttgatagctcaatgtatgtttacttttcaagtgatattcatcaaagttttaactggcagggttaaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
16418610 |
gtatgaacacacttgaagatctagtttgatagctcgatgtatgtttacttttcaagtgattttcatgaaagttttaactggcagggttaaatt |
16418518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 23827895 - 23828012
Alignment:
| Q |
251 |
tgtgttaggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatc |
350 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||| | ||||| || |
|
|
| T |
23827895 |
tgtgttaggagatggtgattttggatcagtttttaagggttggattgatgaacattcatcttctgctgcaaaacctggcacaggcattgctgttgctgtc |
23827994 |
T |
|
| Q |
351 |
aaaagacttcatcaagat |
368 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23827995 |
aaaagacttcatcaagat |
23828012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 251 - 405
Target Start/End: Original strand, 23818700 - 23818854
Alignment:
| Q |
251 |
tgtgttaggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatc |
350 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| | ||||| || |
|
|
| T |
23818700 |
tgtgttaggagatggtgattttggatcagtttttaagggttggattgatgaacgttcatcttctgctgccaaacctggcacaggcattactgttgctgtc |
23818799 |
T |
|
| Q |
351 |
aaaagacttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaa |
405 |
Q |
| |
|
||||||||| | || |||||| | ||||||||| |||| |||||| ||||||| |
|
|
| T |
23818800 |
aaaagacttaaccaggatggcctcaaaggtcacaatgagttgttggttagtttaa |
23818854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 904 - 986
Target Start/End: Original strand, 23832613 - 23832695
Alignment:
| Q |
904 |
aacagaaggctcatattttcaacctctctcttggagcctctgtctgaaggttgctcttggtgctgccaaagggcttgcatttc |
986 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23832613 |
aacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgccaaaggccttgcatttc |
23832695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 904 - 986
Target Start/End: Original strand, 23819516 - 23819598
Alignment:
| Q |
904 |
aacagaaggctcatattttcaacctctctcttggagcctctgtctgaaggttgctcttggtgctgccaaagggcttgcatttc |
986 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
23819516 |
aacaggaggctcatattttcaacctctttcttggagcctccggttgaaggttgctgttggtgctgccaaaggccttgcatttc |
23819598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 251 - 370
Target Start/End: Original strand, 23823970 - 23824089
Alignment:
| Q |
251 |
tgtgttaggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatc |
350 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||||| |||||||||| | ||| | ||||||||||||||||||| ||||||| ||||| || |
|
|
| T |
23823970 |
tgtgttaggagatggcgattttggatcagtttttaagggccggattgatgaacactcactttctgctgccaaacctggcacaggcattgccgttgctgtc |
23824069 |
T |
|
| Q |
351 |
aaaagacttcatcaagatgg |
370 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
23824070 |
aaaagacttaatcaagatgg |
23824089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 910 - 984
Target Start/End: Original strand, 23824842 - 23824916
Alignment:
| Q |
910 |
aggctcatattttcaacctctctcttggagcctctgtctgaaggttgctcttggtgctgccaaagggcttgcatt |
984 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| | |||||||| |
|
|
| T |
23824842 |
aggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgccaaatgtcttgcatt |
23824916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 904 - 986
Target Start/End: Original strand, 23828766 - 23828848
Alignment:
| Q |
904 |
aacagaaggctcatattttcaacctctctcttggagcctctgtctgaaggttgctcttggtgctgccaaagggcttgcatttc |
986 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
23828766 |
aacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgctaaaggccttacatttc |
23828848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 405
Target Start/End: Original strand, 23831912 - 23832038
Alignment:
| Q |
279 |
gtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatcaaaagacttcatcaagatggcttacaag |
378 |
Q |
| |
|
||||| ||||||||||||||||| | |||| ||||||||||||| |||| ||||||| | |||| ||||||||||| |||| |||||||| ||| |
|
|
| T |
23831912 |
gttttcaagggttggattgatgaacactcatcttctgctgccaaacccggcaaaggcattgctgctgctgtcaaaagactttatcaggatggcttcaaag |
23832011 |
T |
|
| Q |
379 |
gtcacagggagtggttggtgagtttaa |
405 |
Q |
| |
|
|||||| ||||| ||| || ||||||| |
|
|
| T |
23832012 |
gtcacaaggagttgtttgtaagtttaa |
23832038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 715 - 820
Target Start/End: Original strand, 23828574 - 23828679
Alignment:
| Q |
715 |
tttctcatcctcatttagtgagattgatcggttattgccttgaaaatgaacaccgtcttctagtctatgagtttatggccaatggaagcttggagaatca |
814 |
Q |
| |
|
|||| ||||||||| |||||| |||||| |||||||| |||||| ||||| || | ||||| | ||||| |||||| | ||| |||||||||||||| |
|
|
| T |
23828574 |
tttcacatcctcatctagtgaaattgattggttattgtcttgaagatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatca |
23828673 |
T |
|
| Q |
815 |
cttgtt |
820 |
Q |
| |
|
|||||| |
|
|
| T |
23828674 |
cttgtt |
23828679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 820
Target Start/End: Original strand, 23824651 - 23824751
Alignment:
| Q |
720 |
catcctcatttagtgagattgatcggttattgccttgaaaatgaacaccgtcttctagtctatgagtttatggccaatggaagcttggagaatcacttgt |
819 |
Q |
| |
|
||||||||| |||||| |||||| |||||||| |||||| ||||| | | ||| | |||||||| |||||| | ||| ||||||||||||||||||| |
|
|
| T |
23824651 |
catcctcatctagtgaaattgattggttattgtcttgaagatgaaaatagccttttggtctatgaatttatgccacgtggcagcttggagaatcacttgt |
23824750 |
T |
|
| Q |
820 |
t |
820 |
Q |
| |
|
| |
|
|
| T |
23824751 |
t |
23824751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 715 - 820
Target Start/End: Original strand, 23832417 - 23832522
Alignment:
| Q |
715 |
tttctcatcctcatttagtgagattgatcggttattgccttgaaaatgaacaccgtcttctagtctatgagtttatggccaatggaagcttggagaatca |
814 |
Q |
| |
|
|||||||||||||| || | | |||||| ||||||||||||||| |||| || ||||||| |||| ||| || ||| | ||| | |||||||||||| |
|
|
| T |
23832417 |
tttctcatcctcatctaatcaaattgattggttattgccttgaagatgacaacagtcttcttgtctttgaattcatgcctcgtggcaacttggagaatca |
23832516 |
T |
|
| Q |
815 |
cttgtt |
820 |
Q |
| |
|
|||||| |
|
|
| T |
23832517 |
cttgtt |
23832522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 798 - 827
Target Start/End: Complemental strand, 10845240 - 10845211
Alignment:
| Q |
798 |
ggaagcttggagaatcacttgtttagaagt |
827 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10845240 |
ggaagcttggagaatcacttgtttagaagt |
10845211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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