View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154-Insertion-10 (Length: 496)

Name: NF0154-Insertion-10
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154-Insertion-10
NF0154-Insertion-10
[»] chr2 (16 HSPs)
chr2 (105-368)||(302374-302636)
chr2 (105-368)||(295738-296000)
chr2 (226-368)||(45485783-45485925)
chr2 (228-368)||(21794487-21794627)
chr2 (226-374)||(39190645-39190793)
chr2 (228-368)||(43081634-43081774)
chr2 (228-357)||(18163938-18164067)
chr2 (227-368)||(29960348-29960476)
chr2 (350-403)||(302269-302322)
chr2 (283-347)||(13273316-13273380)
chr2 (350-402)||(29960258-29960310)
chr2 (228-267)||(13273380-13273419)
chr2 (350-396)||(295654-295700)
chr2 (351-403)||(39190798-39190850)
chr2 (226-254)||(45497050-45497078)
chr2 (226-254)||(45504792-45504820)
[»] chr8 (8 HSPs)
chr8 (107-368)||(37786460-37786721)
chr8 (105-368)||(37186664-37186928)
chr8 (105-256)||(37790983-37791134)
chr8 (228-362)||(11096129-11096261)
chr8 (256-368)||(37791180-37791291)
chr8 (350-403)||(37786773-37786826)
chr8 (350-402)||(37791329-37791381)
chr8 (350-397)||(37186938-37186985)
[»] chr1 (4 HSPs)
chr1 (105-368)||(44541235-44541499)
chr1 (8-105)||(51740299-51740396)
chr1 (401-496)||(51740389-51740485)
chr1 (350-402)||(44541523-44541575)
[»] chr6 (4 HSPs)
chr6 (228-358)||(7501366-7501496)
chr6 (221-357)||(28249224-28249360)
chr6 (228-364)||(31888491-31888627)
chr6 (353-403)||(28249091-28249141)
[»] chr3 (10 HSPs)
chr3 (208-364)||(28920250-28920406)
chr3 (228-356)||(531527-531655)
chr3 (239-368)||(4315556-4315685)
chr3 (107-198)||(41925118-41925209)
chr3 (254-357)||(32813593-32813696)
chr3 (227-312)||(47743868-47743953)
chr3 (350-403)||(18641121-18641174)
chr3 (301-358)||(55418422-55418479)
chr3 (350-402)||(28920420-28920472)
chr3 (228-272)||(55418479-55418523)
[»] scaffold0038 (2 HSPs)
scaffold0038 (221-357)||(49386-49522)
scaffold0038 (353-403)||(49253-49303)
[»] chr5 (8 HSPs)
chr5 (227-368)||(32090200-32090341)
chr5 (105-278)||(690121-690282)
chr5 (228-356)||(9507639-9507767)
chr5 (228-355)||(9503658-9503785)
chr5 (226-368)||(34854047-34854194)
chr5 (226-358)||(3627491-3627626)
chr5 (353-402)||(689961-690010)
chr5 (302-358)||(690055-690111)
[»] chr4 (12 HSPs)
chr4 (220-337)||(5715318-5715435)
chr4 (228-368)||(53008261-53008402)
chr4 (228-368)||(53011153-53011294)
chr4 (245-347)||(16853976-16854078)
chr4 (227-352)||(50935665-50935785)
chr4 (230-368)||(50911866-50912000)
chr4 (350-403)||(5707099-5707152)
chr4 (302-366)||(56563185-56563249)
chr4 (350-402)||(50911741-50911793)
chr4 (350-403)||(50935537-50935590)
chr4 (105-149)||(50912142-50912186)
chr4 (105-164)||(50935909-50935968)
[»] chr7 (7 HSPs)
chr7 (226-356)||(22582333-22582466)
chr7 (240-368)||(45937832-45937960)
chr7 (243-368)||(297068-297193)
chr7 (225-362)||(293181-293319)
chr7 (350-403)||(297005-297058)
chr7 (350-403)||(293111-293164)
chr7 (360-402)||(45937770-45937812)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 105 - 368
Target Start/End: Complemental strand, 302636 - 302374
Alignment:
Q  105 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactg 204  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||||||||||||| |||||    
T  302636 tgttagaacaatcgctatgttctatgcgcagcggaaagtgcttataaaaataagatgtttatgagcaagatgaaaataatagagaaattgtgataaactg 302537  T
Q  205 aaatattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagtt 304  Q
    ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||| |||    
T  302536 aaaaattgattaatgattgttattatttacaacacat-agtgagtatatatacaactggacattgtaacaaactcctctaacaaactaactaccctggtt 302438  T
Q  305 aacacgctaaccaaggttggttactggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||    
T  302437 aacacgctaaccaaggttggttactagactctgcttctgaagacatcagaagctgcacatcaga 302374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 105 - 368
Target Start/End: Complemental strand, 296000 - 295738
Alignment:
Q  105 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactg 204  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||| |||| |||||    
T  296000 tgttagaacaatcgctatgttctatgcacagcggaaagtgcttataaaa-taagttgtttaagagcaagatgaaaataacagagaaattatgataaactg 295902  T
Q  205 aaatattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagtt 304  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||    
T  295901 aaaaattgattaatgattgttattatttacaacacatgagtgagtatatatacaactggacattgtaacaaactcctctaacaaactaactatcctggtt 295802  T
Q  305 aacacgctaaccaaggttggttactggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    ||||| |||| |||||||||||||| |||||||||| ||||||||||||||||| ||| |||||    
T  295801 aacacactaatcaaggttggttactagactctgcttctgaagacatcagaagctgcacatcaga 295738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 226 - 368
Target Start/End: Original strand, 45485783 - 45485925
Alignment:
Q  226 tttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||||||||| ||    
T  45485783 tttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttgt 45485882  T
Q  326 tactggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    | || ||||||| || ||||||||||||||||| |||||||||    
T  45485883 tgctagactctgtttctgaagacatcagaagctgcacttcaga 45485925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 228 - 368
Target Start/End: Original strand, 21794487 - 21794627
Alignment:
Q  228 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtta 327  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | | |||||||||||||||| |||| ||||    
T  21794487 tatttataacacatgagtaagtatatatacaactggacgttgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccatggtttgtta 21794586  T
Q  328 ctggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    || |||||||||| ||||||||||||||||| ||| |||||    
T  21794587 ctagactctgcttctgaagacatcagaagctgcacatcaga 21794627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 226 - 374
Target Start/End: Original strand, 39190645 - 39190793
Alignment:
Q  226 tttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggt 325  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  | | ||||||| ||||||||| ||| ||    
T  39190645 tttatttacaacacatgagtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaactaccttggttaacatgctaaccaaagtttgt 39190744  T
Q  326 tactggactctgcttttgaagacatcagaagctacacttcagattctga 374  Q
    |||| ||||  | | |||||||| ||||| ||| ||||||||| |||||    
T  39190745 tactagacttagatgttgaagacttcagacgctgcacttcagagtctga 39190793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 228 - 368
Target Start/End: Original strand, 43081634 - 43081774
Alignment:
Q  228 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtta 327  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||  | | ||||||| ||||||||| |||  |||    
T  43081634 tatttacaacacatgagtgagtacatatacaattggacgttgtaacaaactcctataacaaactaactaccttcgttaacatgctaaccaatgtttatta 43081733  T
Q  328 ctggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    || |||||||||| ||||||||||||||||| ||| |||||    
T  43081734 ctagactctgcttctgaagacatcagaagctgcacatcaga 43081774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 228 - 357
Target Start/End: Complemental strand, 18164067 - 18163938
Alignment:
Q  228 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtta 327  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||||| | |  |||    
T  18164067 tatttacaacacttgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaatggttatta 18163968  T
Q  328 ctggactctgcttttgaagacatcagaagc 357  Q
    || |||||| ||| | ||||||||||||||    
T  18163967 ctagactctacttctaaagacatcagaagc 18163938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 227 - 368
Target Start/End: Complemental strand, 29960476 - 29960348
Alignment:
Q  227 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtt 326  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||         ||||| ||    | ||||||||||||||||||||| |||    
T  29960476 ttatttacaacacataagtgagtatatatacaactagacgttgtaacaaact---------aactacct----tggttaacacgctaaccaaggtttgtt 29960390  T
Q  327 actggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    ||| ||| |||||| ||||||||||| ||||| | |||||||    
T  29960389 actagaccctgcttctgaagacatcataagctgcccttcaga 29960348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 302322 - 302269
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaatac 403  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  302322 tcagaagctgcacttcagattctgaacaacagttattgattcatattccaatac 302269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 13273380 - 13273316
Alignment:
Q  283 taacaaactaactttcctagttaacacgctaaccaaggttggttactggactctgcttttgaaga 347  Q
    |||||||||||||  | | ||||||||||||||||||||| |||||| |||||||||| ||||||    
T  13273380 taacaaactaactaccttggttaacacgctaaccaaggtttgttactagactctgcttctgaaga 13273316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 29960310 - 29960258
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaata 402  Q
    ||||||||| |||| || ||||| |||||||||||||||||||||||||||||    
T  29960310 tcagaagctgcactccaaattctaaacaacagttattgattaatattccaata 29960258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 13273419 - 13273380
Alignment:
Q  228 tatttacaacacatgagtgagtatatatacaactggacgt 267  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  13273419 tatttacaacacatgagtgaatatatatacaactggacgt 13273380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 295700 - 295654
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatatt 396  Q
    ||||||||| ||||||| ||||| |||||||||||| ||||||||||    
T  295700 tcagaagctgcacttcaaattctaaacaacagttatcgattaatatt 295654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 39190798 - 39190850
Alignment:
Q  351 cagaagctacacttcagattctgaacaacagttattgattaatattccaatac 403  Q
    |||| ||| ||||| ||| ||||| |||||||||||||||||||||| |||||    
T  39190798 cagaggctgcacttaagagtctgagcaacagttattgattaatattctaatac 39190850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 45497050 - 45497078
Alignment:
Q  226 tttatttacaacacatgagtgagtatata 254  Q
    |||||||||||||||||||||||||||||    
T  45497050 tttatttacaacacatgagtgagtatata 45497078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 45504792 - 45504820
Alignment:
Q  226 tttatttacaacacatgagtgagtatata 254  Q
    |||||||||||||||||||||||||||||    
T  45504792 tttatttacaacacatgagtgagtatata 45504820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 107 - 368
Target Start/End: Original strand, 37786460 - 37786721
Alignment:
Q  107 ttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactgaa 206  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||| |||| |||||||    
T  37786460 ttagaacaatcgttatgttctatgcgcagcggaaagtgcttataaaaataagttgtttaagagtaagatgaaaataacagagaaattatgataaactgaa 37786559  T
Q  207 atattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaa 306  Q
    | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||||    
T  37786560 aaattgattaatgattgttattatttacaacacatgagtgaatatatatacaactggacgttgtaacaaagtcctctaacaaactaactaccctggttaa 37786659  T
Q  307 cacgctaaccaaggttggttactggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||| ||||| ||| |||||    
T  37786660 cacgctaaccaaggttggttactagactctgcttatgaagacatcaaaagctgcacatcaga 37786721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 105 - 368
Target Start/End: Original strand, 37186664 - 37186928
Alignment:
Q  105 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgttt-aagagcaagatgaaaataacagagaaattgtgatcaact 203  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||  ||||    
T  37186664 tgttagaacaatcgctatgttctatgcgcagcggaaggtgcttataaaaataagctgttttaagagcaatatgaaaataacagagaaattgtgaaaaact 37186763  T
Q  204 gaaatattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagt 303  Q
     ||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||    
T  37186764 aaaaaaatgattattgattgttattatttacaacacatgagtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaactaccctggt 37186863  T
Q  304 taacacgctaaccaaggttggttactggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    ||||||  || |||| |||  ||||| |||||||||| | ||||||||||||||| |||||||||    
T  37186864 taacactatagccaatgtttattactagactctgcttctaaagacatcagaagctgcacttcaga 37186928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 105 - 256
Target Start/End: Original strand, 37790983 - 37791134
Alignment:
Q  105 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactg 204  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  37790983 tgttagaacaatcgctatgttctatgcgcagcggaaagtgcttataaaaataagctgtttaagagcaagatgaaaataacagagaaattgtgataaactg 37791082  T
Q  205 aaatattgattaatgattgtttttatttacaacacatgagtgagtatatata 256  Q
    ||| |||||||||| |||||| |||| |||||||||| ||||| ||||||||    
T  37791083 aaaaattgattaataattgttattatgtacaacacatcagtgaatatatata 37791134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 228 - 362
Target Start/End: Complemental strand, 11096261 - 11096129
Alignment:
Q  228 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtta 327  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | |  |||||||||||||||| ||| ||||    
T  11096261 tatttacaacacatgagtgagtatatatacaactgaacgttgtaacaaactcctctaacaaactaactaccttgattaacacgctaaccaaagtttgtta 11096162  T
Q  328 ctggactctgcttttgaagacatcagaagctacac 362  Q
    || |||||  ||| |||||||||||||||||||||    
T  11096161 ctagactc--cttctgaagacatcagaagctacac 11096129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 256 - 368
Target Start/End: Original strand, 37791180 - 37791291
Alignment:
Q  256 acaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggttactggactctgcttttgaagacatcagaa 355  Q
    ||||||| ||||||||||||||||||||||||||||||||  | | ||||||| ||||| ||||||||||||||  ||||||||| ||||||||||||||    
T  37791180 acaactgaacgttgtaacaaactcctctaacaaactaactaccttggttaacatgctaatcaaggttggttact-aactctgcttctgaagacatcagaa 37791278  T
Q  356 gctacacttcaga 368  Q
    ||| ||| |||||    
T  37791279 gctgcacatcaga 37791291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 37786773 - 37786826
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaatac 403  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  37786773 tcagaagctgcacttcagattctaaacaacagttattgattaatattccaatac 37786826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 37791329 - 37791381
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaata 402  Q
    ||||||| | ||||||| |||||||||||||||||||||||||||||||||||    
T  37791329 tcagaagttgcacttcatattctgaacaacagttattgattaatattccaata 37791381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 397
Target Start/End: Original strand, 37186938 - 37186985
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattc 397  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  37186938 tcagaagctgcacttcagattctgaacaacaattattgattaatattc 37186985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 105 - 368
Target Start/End: Original strand, 44541235 - 44541499
Alignment:
Q  105 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactg 204  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||    
T  44541235 tgttagaacaatcgctatgttctatgcgcagcggaaagtgcttataaaaataagctgtttaagagtaagatgaaaataacagagaaattgtgataaactg 44541334  T
Q  205 aaatattgattaatgattg-tttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagt 303  Q
    ||  |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||| ||    
T  44541335 aacaattgattaataattgttttttatttacaacacatgagtgagtatatatacaactggacattgtaacaaactcctctaacaaactaactaccctggt 44541434  T
Q  304 taacacgctaaccaaggttggttactggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    |||||| |||| |||||||||||| | |||| ||||| |||||||| |||||||| ||| |||||    
T  44541435 taacacactaatcaaggttggttattagactatgcttctgaagacaacagaagctgcacatcaga 44541499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 51740299 - 51740396
Alignment:
Q  8 aataaatgcagtaatgtcagtgatgttggggtttatagtatttgtaacgcttgttcttcttctctcaagacattgaaattgttagattgctacagaat 105  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51740299 aataaatgcagtactgtcagtgatgttggggtttctagtatttgtaacgcttgttcttcttctctcaagacattgaaattgttagattgctacagaat 51740396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 401 - 496
Target Start/End: Original strand, 51740389 - 51740485
Alignment:
Q  401 tacagaattggcgataaatcc-tattatcgttggctaaattctgcgataatctggagactttgatcattggtggtatccgtgatgtctccaacgatg 496  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  51740389 tacagaattggcgataaatccatattatcgttggctaaattctgcgataatctggagactttgatcattggtggttgccgtgatgtctccaacgatg 51740485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 44541523 - 44541575
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaata 402  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  44541523 tcagaagctgcacttcagattctgaacaacaattattgattaatattccaata 44541575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 228 - 358
Target Start/End: Original strand, 7501366 - 7501496
Alignment:
Q  228 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtta 327  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| ||||    
T  7501366 tatttacaacacatgagtgagtatataaacaactgggcgttgtaacaaactcctctaacaaactaactatcttggttaacacgctaaccaaggtttgtta 7501465  T
Q  328 ctggactctgcttttgaagacatcagaagct 358  Q
    || |||||||||| |||||||||||||||||    
T  7501466 ctagactctgcttgtgaagacatcagaagct 7501496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 221 - 357
Target Start/End: Complemental strand, 28249360 - 28249224
Alignment:
Q  221 ttgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaagg 320  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||  | | |||||||||||||||||||    
T  28249360 ttgttattatttacaacacatgagtgagtatatatacaactagacgttgtaacaaacttctctaacaaactaactaccttggttaacacgctaaccaagg 28249261  T
Q  321 ttggttactggactctgcttttgaagacatcagaagc 357  Q
    || |||||| ||| |||||| ||||||||||||||||    
T  28249260 tttgttactagaccctgcttctgaagacatcagaagc 28249224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 228 - 364
Target Start/End: Complemental strand, 31888627 - 31888491
Alignment:
Q  228 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtta 327  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||  | ||||||||||||||||||||||| ||||    
T  31888627 tatttacaacacatgagtgagtatatatacaattgcacgttgtaacaaacttctctaacaaactaactaccttagttaacacgctaaccaaggtttgtta 31888528  T
Q  328 ctggactctgcttttgaagacatcagaagctacactt 364  Q
    || |||| ||||| ||||||||||||||||| |||||    
T  31888527 ctagactatgcttctgaagacatcagaagctgcactt 31888491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 403
Target Start/End: Complemental strand, 28249141 - 28249091
Alignment:
Q  353 gaagctacacttcagattctgaacaacagttattgattaatattccaatac 403  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  28249141 gaagctgcacttcagattctgaacaacagttattgattaatactccaatac 28249091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 208 - 364
Target Start/End: Original strand, 28920250 - 28920406
Alignment:
Q  208 tattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaac 307  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||  ||| ||||||    
T  28920250 tattgatcaatgattgttattatttacaacatatgagtgagtatatatacaactggacgttataacaaactcctctaataaactaactaccctggttaac 28920349  T
Q  308 acgctaaccaaggttggttactggactctgcttttgaagacatcagaagctacactt 364  Q
    | |||||||||| ||| ||||| |||| ||||| ||||||||||||||||| |||||    
T  28920350 atgctaaccaagattgattactagactatgcttctgaagacatcagaagctgcactt 28920406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 228 - 356
Target Start/End: Original strand, 531527 - 531655
Alignment:
Q  228 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtta 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  | | |||||||||||||||||||||  |||    
T  531527 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaaaaaactaactacctttgttaacacgctaaccaaggtttatta 531626  T
Q  328 ctggactctgcttttgaagacatcagaag 356  Q
    || |||||||||| |||||||||||||||    
T  531627 ctagactctgcttctgaagacatcagaag 531655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 239 - 368
Target Start/End: Complemental strand, 4315685 - 4315556
Alignment:
Q  239 catgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggttactggactctgc 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||||| ||| |||||| ||||||||    
T  4315685 catgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaacgtttgttactagactctgc 4315586  T
Q  339 ttttgaagacatcagaagctacacttcaga 368  Q
    || ||||| ||||||||||| |||||||||    
T  4315585 ttctgaagccatcagaagctgcacttcaga 4315556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 41925118 - 41925209
Alignment:
Q  107 ttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgat 198  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  41925118 ttagaacaatcgctatgttctatgcgcagcggaaagtgcttataaaaataagttgtttaagagcaagatgaaaataacagagaaattgtgat 41925209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 32813696 - 32813593
Alignment:
Q  254 atacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggttactggactctgcttttgaagacatcag 353  Q
    ||||||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||||||||| |||||| || ||||||| | |||||||||     
T  32813696 atacaactggacgttgtaacaaactcctctaacaaactaactaccttcgttaacacgctaaccaaggtttgttactagattctgcttctaaagacatcaa 32813597  T
Q  354 aagc 357  Q
    ||||    
T  32813596 aagc 32813593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 47743953 - 47743868
Alignment:
Q  227 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgct 312  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||  | | |||||||||||    
T  47743953 ttatttacaacacatgagtgaatatatttacaactagacgttgtaacaaactcctgtaacaaactaactaccttggttaacacgct 47743868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 18641121 - 18641174
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaatac 403  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18641121 tcagaagctacacttcagattctgaacaacaattattgattaatattccaatac 18641174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 55418479 - 55418422
Alignment:
Q  301 agttaacacgctaaccaaggttggttactggactctgcttttgaagacatcagaagct 358  Q
    ||||||||||||||||||||||  ||||| |||||||||| |||||||||||||||||    
T  55418479 agttaacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagct 55418422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 28920420 - 28920472
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaata 402  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  28920420 tcagaagctgcacttcagattctgaacaataattattgattaatattccaata 28920472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 55418523 - 55418479
Alignment:
Q  228 tatttacaacacatgagtgagtatatatacaactggacgttgtaa 272  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  55418523 tatttacaatacatgagtgagtatatatacaactggaagttgtaa 55418479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 221 - 357
Target Start/End: Complemental strand, 49522 - 49386
Alignment:
Q  221 ttgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaagg 320  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||  | | |||||||||||||||||||    
T  49522 ttgttattatttacaacacatgagtgagtatatatacaactagacgttgtaacaaacttctctaacaaactaactaccttggttaacacgctaaccaagg 49423  T
Q  321 ttggttactggactctgcttttgaagacatcagaagc 357  Q
    || |||||| ||| |||||| ||||||||||||||||    
T  49422 tttgttactagaccctgcttctgaagacatcagaagc 49386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 403
Target Start/End: Complemental strand, 49303 - 49253
Alignment:
Q  353 gaagctacacttcagattctgaacaacagttattgattaatattccaatac 403  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  49303 gaagctgcacttcagattctgaacaacagttattgattaatactccaatac 49253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 227 - 368
Target Start/End: Complemental strand, 32090341 - 32090200
Alignment:
Q  227 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtt 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||||| ||||| |||    
T  32090341 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactacattggttaacacgctaaccgaggtttgtt 32090242  T
Q  327 actggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    ||| || ||| ||| |||||||||||||||||  ||||||||    
T  32090241 actagattctacttctgaagacatcagaagctgtacttcaga 32090200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 105 - 278
Target Start/End: Complemental strand, 690282 - 690121
Alignment:
Q  105 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactg 204  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||  ||||||| || |||||||||||||||||||||||||||| |        
T  690282 tgttagaacaatcgctatgttctatgcgcagcggaaagtgcttataaatataagttgtttaaaagtaagatgaaaataacagagaaattgtgataa---- 690187  T
Q  205 aaatattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaact 278  Q
            |||||| |||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  690186 --------attaataattgttattatttacaacacatgagtgagtatatatacaactgaacattgtaacaaact 690121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 228 - 356
Target Start/End: Complemental strand, 9507767 - 9507639
Alignment:
Q  228 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtta 327  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||  | | |||||||||||||||||||||  |||    
T  9507767 tatttacaacacatgagtgggtatatatataactggacgttgtaacaaactcctttaacaaactaactaccttggttaacacgctaaccaaggtttatta 9507668  T
Q  328 ctggactctgcttttgaagacatcagaag 356  Q
    || |||||||||| |||||||||||||||    
T  9507667 ctagactctgcttctgaagacatcagaag 9507639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 228 - 355
Target Start/End: Complemental strand, 9503785 - 9503658
Alignment:
Q  228 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtta 327  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |  |||||||||||||||| |||  |||    
T  9503785 tatttacaacacatgagtgagtatatatataactggacgttgtaacaaactcctctaacaaactaactatcttgattaacacgctaaccaaagtttatta 9503686  T
Q  328 ctggactctgcttttgaagacatcagaa 355  Q
    || |||||||||| ||||||| ||||||    
T  9503685 ctagactctgcttctgaagacttcagaa 9503658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 226 - 368
Target Start/End: Complemental strand, 34854194 - 34854047
Alignment:
Q  226 tttatttacaacacatgagtgagtatatatacaactg-----gacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaagg 320  Q
    |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||| |||||  | | ||||||||||||||||| |    
T  34854194 tttatttacaacacatgagtgagtatatatacaactgaactggacgttgtaacaaactcctctaacaaattaactaccttggttaacacgctaaccaaag 34854095  T
Q  321 ttggttactggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    ||  ||||| |||||||||| ||||||||||| ||||| ||| |||||    
T  34854094 tttattactagactctgcttctgaagacatcaaaagctgcacatcaga 34854047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 226 - 358
Target Start/End: Complemental strand, 3627626 - 3627491
Alignment:
Q  226 tttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggt 325  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||    | |||||||||||||||||| || |     
T  3627626 tttatttacaacacatgagtgagtatatatacatctggacgttgtaacaaacttctctaataaactaactacattggttaacacgctaaccaagatttgc 3627527  T
Q  326 tactggactctgctt---ttgaagacatcagaagct 358  Q
    |||| ||||||||||    |||||||||||||||||    
T  3627526 tactagactctgcttctgatgaagacatcagaagct 3627491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 690010 - 689961
Alignment:
Q  353 gaagctacacttcagattctgaacaacagttattgattaatattccaata 402  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  690010 gaagctgcacttcagattctgaacaacagttattgattaatattccaata 689961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 690111 - 690055
Alignment:
Q  302 gttaacacgctaaccaaggttggttactggactctgcttttgaagacatcagaagct 358  Q
    |||||||||||||||||| |||||||||  ||||| ||| ||||||||||| |||||    
T  690111 gttaacacgctaaccaagattggttactaaactctacttctgaagacatcaaaagct 690055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 220 - 337
Target Start/End: Complemental strand, 5715435 - 5715318
Alignment:
Q  220 attgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaag 319  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||    
T  5715435 attgattttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaattattctggttaacacgctaaccaag 5715336  T
Q  320 gttggttactggactctg 337  Q
    ||| |||||| |||||||    
T  5715335 gtttgttactagactctg 5715318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 228 - 368
Target Start/End: Complemental strand, 53008402 - 53008261
Alignment:
Q  228 tatttacaacacatga-gtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtt 326  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||| ||||||||||| ||| |||    
T  53008402 tatttacaacacaggaagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactagtttggttaatacgctaaccaatgtttgtt 53008303  T
Q  327 actggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    ||| |||||||||| |||||||||||||||||  ||||||||    
T  53008302 actagactctgcttctgaagacatcagaagctgtacttcaga 53008261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 228 - 368
Target Start/End: Complemental strand, 53011294 - 53011153
Alignment:
Q  228 tatttacaacacatga-gtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtt 326  Q
    ||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||||||||||  | | ||||||||||||||||| ||| |||    
T  53011294 tatttacaacacaggaagtgagtatatatacaactggacgttttaacaaaatcctctaacaaactaactaccttggttaacacgctaaccaatgtttgtt 53011195  T
Q  327 actggactctgcttttgaagacatcagaagctacacttcaga 368  Q
    ||| |||||||||| ||||||||||| ||||| ||| |||||    
T  53011194 actagactctgcttctgaagacatcataagctgcacatcaga 53011153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 347
Target Start/End: Original strand, 16853976 - 16854078
Alignment:
Q  245 tgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggttactggactctgcttttga 344  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    | ||||||||||||||||||||| |||||| |||||||||| |||    
T  16853976 tgagtatatatacaactggacgttgtaacaaattcctctaacaaactaactacgttggttaacacgctaaccaaggtttgttactagactctgcttctga 16854075  T
Q  345 aga 347  Q
    |||    
T  16854076 aga 16854078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 227 - 352
Target Start/End: Complemental strand, 50935785 - 50935665
Alignment:
Q  227 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggtt 326  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||     ||||||||||||||||| ||| |||    
T  50935785 ttatttacaacacatgagtgagtatatatacaactagatgttgtaacaaactcctctaactaactaccttg----gttaacacgctaaccaa-gtttgtt 50935691  T
Q  327 actggactctgcttttgaagacatca 352  Q
    ||| |||||  ||| |||||||||||    
T  50935690 actagactcaacttctgaagacatca 50935665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 368
Target Start/End: Complemental strand, 50912000 - 50911866
Alignment:
Q  230 tttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggttact 329  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| ||    | ||||| ||||||||||| ||| ||||||    
T  50912000 tttacaacacatgagtgagtatatatacaactgggtgttgtaacaaactcctctaactaactacct----tggttaatacgctaaccaa-gtttgttact 50911906  T
Q  330 ggactc-tgcttttgaagacatcagaagctacacttcaga 368  Q
     |||||  |||| |||||||||||||| || ||| |||||    
T  50911905 agactcaagcttctgaagacatcagaatctgcacatcaga 50911866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 5707152 - 5707099
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaatac 403  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5707152 tcagaagctacacttcagattctgaacaacaattattgattaatattccaatac 5707099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 56563249 - 56563185
Alignment:
Q  302 gttaacacgctaaccaaggttggttactggactctgcttttgaagacatcagaagctacacttca 366  Q
    ||||||||||||||||||||| |||| | |||||||||| ||||||||||||||||| |||||||    
T  56563249 gttaacacgctaaccaaggtttgttagtagactctgcttctgaagacatcagaagctgcacttca 56563185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 50911793 - 50911741
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaata 402  Q
    ||||||||| |||| ||| ||||||||||||||||||||||||||||| ||||    
T  50911793 tcagaagctgcactccagcttctgaacaacagttattgattaatattctaata 50911741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 50935590 - 50935537
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaatac 403  Q
    ||||||| | |||| ||| ||||||||||||||||||||||||||||| |||||    
T  50935590 tcagaagttgcactccagcttctgaacaacagttattgattaatattctaatac 50935537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 50912186 - 50912142
Alignment:
Q  105 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttat 149  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||    
T  50912186 tgttagaacaatcactatgttctatgcgcaacggaaagtgcttat 50912142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 50935968 - 50935909
Alignment:
Q  105 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgttt 164  Q
    |||||||| |||| ||||||| ||||||||| |||||||||||||  |||||| ||||||    
T  50935968 tgttagaacaatcactatgttatatgcgcagtggaaagtgcttatggaaataagctgttt 50935909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 226 - 356
Target Start/End: Original strand, 22582333 - 22582466
Alignment:
Q  226 tttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggt 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | | |||||||||||||||||||||  |    
T  22582333 tttatttacaacacatgagtgagtatatatacaactggacgttgtaccaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttat 22582432  T
Q  326 tactggact---ctgcttttgaagacatcagaag 356  Q
    |||| ||||   ||||||||||||||||||||||    
T  22582433 tactagactctgctgcttttgaagacatcagaag 22582466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 240 - 368
Target Start/End: Complemental strand, 45937960 - 45937832
Alignment:
Q  240 atgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggttactggactctgct 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  | | |||||||||||||||||||||  ||||| ||| |||||    
T  45937960 atgagtgagtatatatacaactggacgttgtaacaaactcctctaactaactaactaccttggttaacacgctaaccaaggtttattactagaccctgct 45937861  T
Q  340 tttgaagacatcagaagctacacttcaga 368  Q
    ||||||||||||| ||||| |||||||||    
T  45937860 tttgaagacatcaaaagctgcacttcaga 45937832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 243 - 368
Target Start/End: Complemental strand, 297193 - 297068
Alignment:
Q  243 agtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttggttactggactctgctttt 342  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||  | | ||||||||||||||||||||| ||||||  |||| | || |    
T  297193 agtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttgttactaaactcagtttct 297094  T
Q  343 gaagacatcagaagctacacttcaga 368  Q
    |||||||||||||||| ||| |||||    
T  297093 gaagacatcagaagctgcacatcaga 297068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 225 - 362
Target Start/End: Complemental strand, 293319 - 293181
Alignment:
Q  225 ttttatttacaa-cacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcctagttaacacgctaaccaaggttg 323  Q
    |||||||||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||  | | ||||||||||||||||| |||     
T  293319 ttttatttacaaacatatgagtgagtatatatacaactagacgttgtaacaaacccctctaacaaactaactaccttggttaacacgctaaccaatgttt 293220  T
Q  324 gttactggactctgcttttgaagacatcagaagctacac 362  Q
    ||||||  |||| | || ||||||||||| |||||||||    
T  293219 gttactaaactcagtttctgaagacatcaaaagctacac 293181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 297058 - 297005
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaatac 403  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| |||||    
T  297058 tcagaagctacacttcagaagctgaacaacagttattgattaatattctaatac 297005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 293164 - 293111
Alignment:
Q  350 tcagaagctacacttcagattctgaacaacagttattgattaatattccaatac 403  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||| |||||    
T  293164 tcagaagctgcacttcagaagctgaacaacagttattgattaatattctaatac 293111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 402
Target Start/End: Complemental strand, 45937812 - 45937770
Alignment:
Q  360 cacttcagattctgaacaacagttattgattaatattccaata 402  Q
    |||| ||||||||||||||||||||||||||||||||| ||||    
T  45937812 cactccagattctgaacaacagttattgattaatattctaata 45937770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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