View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154-Insertion-11 (Length: 496)

Name: NF0154-Insertion-11
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154-Insertion-11
NF0154-Insertion-11
[»] chr7 (9 HSPs)
chr7 (8-468)||(32714145-32714605)
chr7 (308-452)||(32717556-32717700)
chr7 (15-185)||(32717340-32717510)
chr7 (344-449)||(32708428-32708533)
chr7 (15-125)||(32708183-32708293)
chr7 (172-238)||(7612346-7612412)
chr7 (202-236)||(8704503-8704537)
chr7 (202-236)||(9210535-9210569)
chr7 (165-238)||(22759065-22759139)
[»] chr6 (4 HSPs)
chr6 (51-125)||(10381837-10381911)
chr6 (51-125)||(10408327-10408401)
chr6 (340-449)||(10380885-10380994)
chr6 (337-449)||(10409847-10409959)
[»] chr3 (8 HSPs)
chr3 (165-238)||(30574029-30574102)
chr3 (180-238)||(2304358-2304416)
chr3 (171-236)||(28795961-28796025)
chr3 (165-227)||(3776756-3776819)
chr3 (199-238)||(20669093-20669132)
chr3 (165-226)||(34118836-34118897)
chr3 (208-236)||(1508710-1508738)
chr3 (192-236)||(46778356-46778400)
[»] chr5 (11 HSPs)
chr5 (170-230)||(5963407-5963467)
chr5 (165-233)||(6593180-6593248)
chr5 (163-231)||(5559608-5559676)
chr5 (165-238)||(30291141-30291214)
chr5 (177-238)||(41819504-41819565)
chr5 (208-238)||(39105387-39105417)
chr5 (208-238)||(42573896-42573926)
chr5 (165-238)||(14675017-14675090)
chr5 (165-238)||(28776856-28776928)
chr5 (188-236)||(1130862-1130910)
chr5 (170-230)||(6944882-6944942)
[»] chr2 (6 HSPs)
chr2 (172-238)||(9833042-9833108)
chr2 (165-238)||(9174695-9174767)
chr2 (165-238)||(15288723-15288796)
chr2 (188-236)||(22971646-22971694)
chr2 (168-236)||(32592461-32592528)
chr2 (208-236)||(42659280-42659308)
[»] chr8 (6 HSPs)
chr8 (170-237)||(41475178-41475244)
chr8 (208-238)||(37444532-37444562)
chr8 (208-238)||(40859835-40859865)
chr8 (172-238)||(43730664-43730730)
chr8 (208-236)||(31916538-31916566)
chr8 (208-236)||(38750271-38750299)
[»] chr4 (8 HSPs)
chr4 (165-238)||(2987069-2987142)
chr4 (165-226)||(19039661-19039722)
chr4 (165-234)||(50298411-50298480)
chr4 (180-234)||(39929882-39929935)
chr4 (173-238)||(42641750-42641815)
chr4 (170-218)||(16494920-16494968)
chr4 (208-236)||(22030117-22030145)
chr4 (174-238)||(51555984-51556047)
[»] chr1 (6 HSPs)
chr1 (165-234)||(1829075-1829143)
chr1 (171-218)||(12480932-12480979)
chr1 (208-238)||(5894280-5894310)
chr1 (208-238)||(38116302-38116332)
chr1 (209-238)||(23544757-23544786)
chr1 (207-236)||(33541837-33541866)
[»] scaffold0590 (1 HSPs)
scaffold0590 (170-238)||(1191-1258)
[»] scaffold0275 (1 HSPs)
scaffold0275 (170-238)||(2717-2784)


Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 32714145 - 32714605
Alignment:
Q  8 aaggacaccagtggatgtaccatttggaagaaactattatccaacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcagcttcat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32714145 aaggacaccagtggatgtaccatttggaagaaactattatccaacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcaacttcat 32714244  T
Q  108 cttgataaatacactggttagtgtttaacacacttcatagcttttctatttagctcgtgttcggataaacaacttaatttacaacttataatataaacat 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32714245 cttgataaatacactggttggtgtttaacacacttcatagcttttctatttagctcgtgttcggataaacaacttaatttacaacttataatataaacat 32714344  T
Q  208 ttatcatgataagcgcttatgtataagctataagaacagatcataaatacttatgctagtacatatgctataatatgtcaatccatgcccttagtttttg 307  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  32714345 ttatcatgataagcgcttatgtataagctataagaacatatcataaatacttatgctagtacatatgctatattatgtcaatccatgcccttggtttttg 32714444  T
Q  308 tactacattgttcatttttctaactacttttttaacaggtactggttttcaatcaaaaggttcatacttgtttggtcatttcagtatgaacataaagatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32714445 tactacattgttcatttttctaactacttttttaacaggtactggttttcaatcaaaaggttcatacttgtttggtcatttcagtatgaacataaagatg 32714544  T
Q  408 gttcctggtgattcagctggcacagtaaccgctttctatgtatgtgcctaataaattaaag 468  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  32714545 gttcctggtgattcagctggcacggtaaccgctttctatgtatgtgcctaacaaattaaag 32714605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 308 - 452
Target Start/End: Original strand, 32717556 - 32717700
Alignment:
Q  308 tactacattgttcatttttctaactacttttttaacaggtactggttttcaatcaaaaggttcatacttgtttggtcatttcagtatgaacataaagatg 407  Q
    ||||| |||| |||||||||||||| ||||||  | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||    
T  32717556 tactatattggtcatttttctaacttctttttgtataggtactggttttcagtccaaaggttcatacttgtttggtcatttcagtatgaacattaagatg 32717655  T
Q  408 gttcctggtgattcagctggcacagtaaccgctttctatgtatgt 452  Q
    |||||||||||||||||||||||||| || |||||||||||||||    
T  32717656 gttcctggtgattcagctggcacagtcactgctttctatgtatgt 32717700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 32717340 - 32717510
Alignment:
Q  15 ccagtggatgtaccatttggaagaaactattatccaacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcagcttcatcttgata 114  Q
    ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  32717340 ccagttgatgtaccatttggaagaaactattaccccacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcaacttcatcttgaca 32717439  T
Q  115 aatacactggttagtgtttaacacacttcatagcttttctatttagctcgtgttcggataaacaacttaat 185  Q
    | |||||||||||||| |||||| ||||||   |||| ||||||||  | |||| | ||||| ||||||||    
T  32717440 agtacactggttagtgcttaacaaacttcaatactttcctatttaggccatgtttgtataaataacttaat 32717510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 344 - 449
Target Start/End: Original strand, 32708428 - 32708533
Alignment:
Q  344 aggtactggttttcaatcaaaaggttcatacttgtttggtcatttcagtatgaacataaagatggttcctggtgattcagctggcacagtaaccgctttc 443  Q
    |||||||||||| ||||| ||||| |||||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  32708428 aggtactggtttccaatctaaaggatcatacttgtttggccactttagcatgaacataaagatggttcctggtgattcagctggcacagtcaccgctttt 32708527  T
Q  444 tatgta 449  Q
    ||||||    
T  32708528 tatgta 32708533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 32708183 - 32708293
Alignment:
Q  15 ccagtggatgtaccatttggaagaaactattatccaacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcagcttcatcttgata 114  Q
    ||||| |||||||| |||||  ||||||||   |||||||||||||||||||| ||||||||||| ||||  |||||||||||| | |||| ||||||||    
T  32708183 ccagtagatgtaccttttggtcgaaactatgtaccaacttgggcttttgatcacatcaaatactttaatgaaggttctgagattgaacttcttcttgata 32708282  T
Q  115 aatacactggt 125  Q
    |||||||||||    
T  32708283 aatacactggt 32708293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 7612346 - 7612412
Alignment:
Q  172 ataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    |||||||||||||||| || ||||||  |||| || |||||||||||||| | ||||||||||||||    
T  7612346 ataaacaacttaatttgcagcttatagcataagcacttatcatgataagctcatatgtataagctat 7612412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 8704503 - 8704537
Alignment:
Q  202 aaacatttatcatgataagcgcttatgtataagct 236  Q
    ||||| |||||||||||||||||||||||||||||    
T  8704503 aaacagttatcatgataagcgcttatgtataagct 8704537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 9210535 - 9210569
Alignment:
Q  202 aaacatttatcatgataagcgcttatgtataagct 236  Q
    |||||||||||||||||| ||||||||||||||||    
T  9210535 aaacatttatcatgataatcgcttatgtataagct 9210569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 22759065 - 22759139
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaaca--tttatcatgataagcgcttatgtataagctat 238  Q
    |||| ||||||||||||||||| |  ||||||| ||||||||  |||||||| ||||||| |||||| ||||||||    
T  22759065 tgtttggataaacaacttaattaagcacttatagtataaacatttttatcat-ataagcgtttatgtttaagctat 22759139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 10381911 - 10381837
Alignment:
Q  51 acttgggcttttgatcatatcaaatacttcaatggtggttctgagattcagcttcatcttgataaatacactggt 125  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| |||||||    
T  10381911 acttgggcttatgatcatatcaaatacttaaatggtggttctgagattctgcttaatcttgataaatccactggt 10381837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 10408327 - 10408401
Alignment:
Q  51 acttgggcttttgatcatatcaaatacttcaatggtggttctgagattcagcttcatcttgataaatacactggt 125  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||| |||| |||||||||| | |||||||    
T  10408327 acttgggcttatgatcatatcaaatacttaaatggtggttctgaaattctgcttaatcttgataagtccactggt 10408401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 340 - 449
Target Start/End: Complemental strand, 10380994 - 10380885
Alignment:
Q  340 taacaggtactggttttcaatcaaaaggttcatacttgtttggtcatttcagtatgaacataaagatggttcctggtgattcagctggcacagtaaccgc 439  Q
    ||||||||||||| |||||||| ||||| || || || |||||||| || |||||| ||||||  |||||  |||||||||||||||| ||||| || ||    
T  10380994 taacaggtactggctttcaatccaaagggtcttatttatttggtcactttagtatgtacataagaatggtagctggtgattcagctggaacagtcactgc 10380895  T
Q  440 tttctatgta 449  Q
    ||||||||||    
T  10380894 tttctatgta 10380885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 449
Target Start/End: Original strand, 10409847 - 10409959
Alignment:
Q  337 ttttaacaggtactggttttcaatcaaaaggttcatacttgtttggtcatttcagtatgaacataaagatggttcctggtgattcagctggcacagtaac 436  Q
    ||||||||||||| || |||||||| ||||| || || || |||||||| || ||||||  |||||| ||||| ||||||||||||||||| || || ||    
T  10409847 ttttaacaggtaccggctttcaatccaaagggtcttatttatttggtcactttagtatgttcataaaaatggtacctggtgattcagctggaactgtcac 10409946  T
Q  437 cgctttctatgta 449  Q
     ||||||||||||    
T  10409947 tgctttctatgta 10409959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 30574102 - 30574029
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    |||| ||||||||| | |||||| || ||||||  |||| ||||||||||||||||||||||||||||||||||    
T  30574102 tgtttggataaacaccataatttgcagcttatatcataagcatttatcatgataagcgcttatgtataagctat 30574029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 2304416 - 2304358
Alignment:
Q  180 cttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    ||||||||||||||||||| | || |||| ||||||||||| | |||||||||||||||    
T  2304416 cttaatttacaacttataacacaagcattcatcatgataagtgattatgtataagctat 2304358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 28796025 - 28795961
Alignment:
Q  171 gataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagct 236  Q
    ||||||||||||| |||||| ||||||  | |||||||||||||||||| | ||||||||||||||    
T  28796025 gataaacaactta-tttacagcttatagcacaaacatttatcatgataaacacttatgtataagct 28795961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 3776819 - 3776756
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcat-gataagcgcttat 227  Q
    |||| ||||||||||||||||||||  |||||| |||||||| |||||||  ||||||||||||    
T  3776819 tgtttggataaacaacttaatttactgcttatagtataaacacttatcatctataagcgcttat 3776756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 20669093 - 20669132
Alignment:
Q  199 tataaacatttatcatgataagcgcttatgtataagctat 238  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  20669093 tataagcatttatcatgataagcacttatgtataagctat 20669132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 34118836 - 34118897
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgctta 226  Q
    |||| ||||||||||||||| ||||||||||||  |||| | || |||||||||||| ||||    
T  34118836 tgtttggataaacaacttaaattacaacttatagcataagcgttgatcatgataagctctta 34118897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 1508738 - 1508710
Alignment:
Q  208 ttatcatgataagcgcttatgtataagct 236  Q
    |||||||||||||||||||||||||||||    
T  1508738 ttatcatgataagcgcttatgtataagct 1508710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 46778400 - 46778356
Alignment:
Q  192 cttataatataaacatttatcatgataagcgcttatgtataagct 236  Q
    |||||| || ||||| |||||||||||||||||||||||| ||||    
T  46778400 cttatagtacaaacacttatcatgataagcgcttatgtatcagct 46778356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 5963467 - 5963407
Alignment:
Q  170 ggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgta 230  Q
    |||||||||||||||||| ||| |||||  |||| ||||||||||||||||||||||||||    
T  5963467 ggataaacaacttaatttgcaatttatagcataagcatttatcatgataagcgcttatgta 5963407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 6593180 - 6593248
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataa 233  Q
    |||| ||||||||||||||||||||| ||||||  |||| |||||||| ||||| ||||||||||||||    
T  6593180 tgtttggataaacaacttaatttacagcttatagcataatcatttatcttgatacgcgcttatgtataa 6593248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 5559608 - 5559676
Alignment:
Q  163 cgtgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtat 231  Q
    |||||| |||||||||||||||||| || ||||||  |||||  ||||||||||||||||||| |||||    
T  5559608 cgtgtttggataaacaacttaatttgcagcttatataataaatgtttatcatgataagcgcttgtgtat 5559676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 30291141 - 30291214
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    |||| |||||| ||||||||||| || ||||||  ||||||| |||||||||||| |||||||| |||| ||||    
T  30291141 tgtttggataaccaacttaatttgcagcttatagcataaacacttatcatgataaacgcttatgcataacctat 30291214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 41819504 - 41819565
Alignment:
Q  177 caacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    |||||||||||||| ||||||  ||||||| |||||||||| |||| || ||||||||||||    
T  41819504 caacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagctat 41819565  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 238
Target Start/End: Original strand, 39105387 - 39105417
Alignment:
Q  208 ttatcatgataagcgcttatgtataagctat 238  Q
    |||||||||||||||||||||||||||||||    
T  39105387 ttatcatgataagcgcttatgtataagctat 39105417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 238
Target Start/End: Complemental strand, 42573926 - 42573896
Alignment:
Q  208 ttatcatgataagcgcttatgtataagctat 238  Q
    |||||||||||||||||||||||||||||||    
T  42573926 ttatcatgataagcgcttatgtataagctat 42573896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 14675090 - 14675017
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    |||| ||| |||||||||||||| || |||||   ||||| | ||||||||||||| ||||||||| |||||||    
T  14675090 tgtttggacaaacaacttaatttgcagcttatggcataaatagttatcatgataagtgcttatgtagaagctat 14675017  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 28776856 - 28776928
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    |||| |||||||||||||| ||| || ||||||   ||| || ||||||||||||| |||||||||||||||||    
T  28776856 tgtttggataaacaactta-tttgcagcttatagcctaagcacttatcatgataagtgcttatgtataagctat 28776928  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 1130862 - 1130910
Alignment:
Q  188 acaacttataatataaacatttatcatgataagcgcttatgtataagct 236  Q
    ||||||||||  | |||||||||| ||||||||||||| ||||||||||    
T  1130862 acaacttatagcacaaacatttattatgataagcgcttgtgtataagct 1130910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 6944942 - 6944882
Alignment:
Q  170 ggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgta 230  Q
    |||||||||||||||||| || ||||||| |||| || ||||||| |||||| || |||||    
T  6944942 ggataaacaacttaatttgcatcttataacataatcacttatcattataagcactaatgta 6944882  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 9833042 - 9833108
Alignment:
Q  172 ataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    ||||||||||||||||||| ||||||  |||| ||||||||||||||| | ||||||||||| ||||    
T  9833042 ataaacaacttaatttacagcttatagcataagcatttatcatgataaacacttatgtataatctat 9833108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 9174695 - 9174767
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    |||| |||||||||||||| ||| || ||||| | || | ||||||||||||||| | ||||||||||||||||    
T  9174695 tgtttggataaacaactta-tttgcagcttatgagattagcatttatcatgataaacacttatgtataagctat 9174767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 15288796 - 15288723
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    |||| |||| |||| ||||||||| | ||||||  ||||||  | |||| ||||||||||||||||||||||||    
T  15288796 tgtttggattaacagcttaatttatagcttatagcataaactctcatcaagataagcgcttatgtataagctat 15288723  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 22971694 - 22971646
Alignment:
Q  188 acaacttataatataaacatttatcatgataagcgcttatgtataagct 236  Q
    ||||||||||  | |||||||||| ||||||||||||| ||||||||||    
T  22971694 acaacttatagcacaaacatttattatgataagcgcttgtgtataagct 22971646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 32592461 - 32592528
Alignment:
Q  168 tcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagct 236  Q
    |||||||||||||||| |||  | ||||||  | ||||| ||||||| |||||||||||||||||||||    
T  32592461 tcggataaacaactta-tttgtagcttatagcacaaacacttatcattataagcgcttatgtataagct 32592528  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 42659308 - 42659280
Alignment:
Q  208 ttatcatgataagcgcttatgtataagct 236  Q
    |||||||||||||||||||||||||||||    
T  42659308 ttatcatgataagcgcttatgtataagct 42659280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 41475244 - 41475178
Alignment:
Q  170 ggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagcta 237  Q
    |||||||||||||| ||| |||||||||| | ||||| || ||||||||||| |||||||||||||||    
T  41475244 ggataaacaactta-tttgcaacttataagacaaacacttgtcatgataagcacttatgtataagcta 41475178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 238
Target Start/End: Complemental strand, 37444562 - 37444532
Alignment:
Q  208 ttatcatgataagcgcttatgtataagctat 238  Q
    |||||||||||||||||||||||||||||||    
T  37444562 ttatcatgataagcgcttatgtataagctat 37444532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 238
Target Start/End: Complemental strand, 40859865 - 40859835
Alignment:
Q  208 ttatcatgataagcgcttatgtataagctat 238  Q
    |||||||||||||||||||||||||||||||    
T  40859865 ttatcatgataagcgcttatgtataagctat 40859835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 43730664 - 43730730
Alignment:
Q  172 ataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    |||||||||||||||| || ||| ||  |||||  ||||||||||||||  ||||||||||||||||    
T  43730664 ataaacaacttaatttgcagcttttagcataaaagtttatcatgataagtacttatgtataagctat 43730730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 31916538 - 31916566
Alignment:
Q  208 ttatcatgataagcgcttatgtataagct 236  Q
    |||||||||||||||||||||||||||||    
T  31916538 ttatcatgataagcgcttatgtataagct 31916566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 38750271 - 38750299
Alignment:
Q  208 ttatcatgataagcgcttatgtataagct 236  Q
    |||||||||||||||||||||||||||||    
T  38750271 ttatcatgataagcgcttatgtataagct 38750299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 2987069 - 2987142
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    |||| |||||||||| ||||||| || ||||||| ||||   ||||||||||||||| ||||| ||||||||||    
T  2987069 tgtttggataaacaagttaatttgcagcttataacataagtgtttatcatgataagcacttatttataagctat 2987142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 19039661 - 19039722
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgctta 226  Q
    |||| |||||||||||||||||| || |||||||||||  || ||||||||||||| |||||    
T  19039661 tgtttggataaacaacttaatttgcagcttataatataggcaattatcatgataagtgctta 19039722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 50298411 - 50298480
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataag 234  Q
    |||| ||||||||||||||||||  | ||||||  ||||||| ||||||||||||  |||||||||||||    
T  50298411 tgtttggataaacaacttaatttgaagcttatagcataaacacttatcatgataaatgcttatgtataag 50298480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 39929935 - 39929882
Alignment:
Q  180 cttaatttacaacttataatataaacatttatcatgataagcgcttatgtataag 234  Q
    ||||||| ||||||||||| |||||||||||||||  |||| |||||||||||||    
T  39929935 cttaattaacaacttataacataaacatttatcat-ttaagtgcttatgtataag 39929882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 42641815 - 42641750
Alignment:
Q  173 taaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    |||||| |||||||| || ||||| | |||| || ||||||||||||| | |||||||||||||||    
T  42641815 taaacagcttaatttgcagcttattacataagcacttatcatgataagtgtttatgtataagctat 42641750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 16494968 - 16494920
Alignment:
Q  170 ggataaacaacttaatttacaacttataatataaacatttatcatgata 218  Q
    ||||||||||||||  || |||||||||  |||||||||||||||||||    
T  16494968 ggataaacaacttagcttccaacttatagcataaacatttatcatgata 16494920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 22030117 - 22030145
Alignment:
Q  208 ttatcatgataagcgcttatgtataagct 236  Q
    |||||||||||||||||||||||||||||    
T  22030117 ttatcatgataagcgcttatgtataagct 22030145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 51556047 - 51555984
Alignment:
Q  174 aaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    ||||||||||||  |  |||||||| |||| |||||||||| ||||| |||||||||||||||||    
T  51556047 aaacaacttaataaagcacttataacataaccatttatcat-ataagtgcttatgtataagctat 51555984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 1829143 - 1829075
Alignment:
Q  165 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataag 234  Q
    |||| |||||||||||||| || | ||| ||||  ||||||| |||||||||||||||||||||||||||    
T  1829143 tgtttggataaacaacttatttga-aacctatagcataaacacttatcatgataagcgcttatgtataag 1829075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 12480932 - 12480979
Alignment:
Q  171 gataaacaacttaatttacaacttataatataaacatttatcatgata 218  Q
    |||||||||||||||||| ||||||||  |||| ||||||||||||||    
T  12480932 gataaacaacttaatttagaacttatagcataagcatttatcatgata 12480979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 238
Target Start/End: Complemental strand, 5894310 - 5894280
Alignment:
Q  208 ttatcatgataagcgcttatgtataagctat 238  Q
    |||||||||||||||||||||||||||||||    
T  5894310 ttatcatgataagcgcttatgtataagctat 5894280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 238
Target Start/End: Complemental strand, 38116332 - 38116302
Alignment:
Q  208 ttatcatgataagcgcttatgtataagctat 238  Q
    |||||||||||||||||||||||||||||||    
T  38116332 ttatcatgataagcgcttatgtataagctat 38116302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 23544786 - 23544757
Alignment:
Q  209 tatcatgataagcgcttatgtataagctat 238  Q
    ||||||||||||||||||||||||||||||    
T  23544786 tatcatgataagcgcttatgtataagctat 23544757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 33541866 - 33541837
Alignment:
Q  207 tttatcatgataagcgcttatgtataagct 236  Q
    ||||||||||||||||||||||||||||||    
T  33541866 tttatcatgataagcgcttatgtataagct 33541837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 1258 - 1191
Alignment:
Q  170 ggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    ||||||||||||||||| |  |||||||  |||||| | |||||| ||||| |||||||||||||||||    
T  1258 ggataaacaacttaattaagtacttatagcataaacgtctatcat-ataagtgcttatgtataagctat 1191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 2717 - 2784
Alignment:
Q  170 ggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 238  Q
    ||||||||||||||||| |  |||||||  |||||| | |||||| ||||| |||||||||||||||||    
T  2717 ggataaacaacttaattaagtacttatagcataaacgtctatcat-ataagtgcttatgtataagctat 2784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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