View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154-Insertion-17 (Length: 58)

Name: NF0154-Insertion-17
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154-Insertion-17
NF0154-Insertion-17
[»] chr7 (10 HSPs)
chr7 (16-58)||(5335841-5335883)
chr7 (15-58)||(14593680-14593723)
chr7 (15-58)||(16013203-16013246)
chr7 (17-58)||(30200281-30200322)
chr7 (22-58)||(36514532-36514568)
chr7 (17-52)||(48736221-48736256)
chr7 (16-58)||(11593879-11593921)
chr7 (16-58)||(31005142-31005184)
chr7 (16-58)||(35906522-35906564)
chr7 (16-58)||(37617863-37617905)
[»] chr1 (8 HSPs)
chr1 (9-54)||(7814387-7814432)
chr1 (16-58)||(26016356-26016398)
chr1 (16-58)||(1210664-1210706)
chr1 (16-58)||(9509237-9509279)
chr1 (16-58)||(9592653-9592695)
chr1 (16-58)||(30202451-30202493)
chr1 (16-58)||(43240702-43240744)
chr1 (17-55)||(52633494-52633532)
[»] chr6 (3 HSPs)
chr6 (20-56)||(5129162-5129198)
chr6 (16-58)||(6293690-6293732)
chr6 (16-58)||(28085295-28085337)
[»] chr5 (7 HSPs)
chr5 (16-57)||(27998343-27998384)
chr5 (14-54)||(21952274-21952314)
chr5 (14-57)||(33006582-33006625)
chr5 (16-58)||(1275184-1275226)
chr5 (16-58)||(1287910-1287952)
chr5 (16-58)||(10639216-10639258)
chr5 (15-53)||(43558134-43558172)
[»] chr2 (4 HSPs)
chr2 (17-58)||(9647927-9647968)
chr2 (16-55)||(45077670-45077709)
chr2 (16-58)||(7825277-7825319)
chr2 (16-58)||(36183370-36183412)
[»] chr8 (5 HSPs)
chr8 (22-58)||(30456538-30456574)
chr8 (19-58)||(39953588-39953627)
chr8 (16-58)||(36395271-36395313)
chr8 (16-58)||(39760745-39760787)
chr8 (16-58)||(39946776-39946818)
[»] chr4 (9 HSPs)
chr4 (16-56)||(18966474-18966514)
chr4 (22-54)||(40933223-40933255)
chr4 (15-58)||(31403340-31403383)
chr4 (14-52)||(290112-290150)
chr4 (16-58)||(12494669-12494711)
chr4 (8-58)||(18499792-18499842)
chr4 (16-58)||(31960135-31960177)
chr4 (16-58)||(33709838-33709880)
chr4 (16-58)||(56375209-56375251)
[»] chr3 (4 HSPs)
chr3 (16-58)||(46568035-46568077)
chr3 (16-58)||(47542033-47542075)
chr3 (16-58)||(51448030-51448072)
chr3 (16-58)||(52138719-52138761)


Alignment Details
Target: chr7 (Bit Score: 35; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 5335883 - 5335841
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  5335883 gtctagtcttaccacacattcaacgcaacatcctcatctctgc 5335841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 14593723 - 14593680
Alignment:
Q  15 cgtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    |||||| ||||| ||||||| |||||||||||||||||||||||    
T  14593723 cgtctagtcttaccacacatccaacgcaacatcctcatctctgc 14593680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 16013246 - 16013203
Alignment:
Q  15 cgtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    |||||| ||||| ||||||| |||||||||||||||||||||||    
T  16013246 cgtctagtcttaccacacatccaacgcaacatcctcatctctgc 16013203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 30200281 - 30200322
Alignment:
Q  17 tctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    |||||||||| ||||||| |||| ||||||||||||||||||    
T  30200281 tctaatcttaccacacatccaacacaacatcctcatctctgc 30200322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 36514532 - 36514568
Alignment:
Q  22 tcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  36514532 tcttaccacacatccaacgcaacatcctcatctctgc 36514568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 48736221 - 48736256
Alignment:
Q  17 tctaatcttatcacacattcaacgcaacatcctcat 52  Q
    |||| ||||| |||||||||||||||||||||||||    
T  48736221 tctagtcttaccacacattcaacgcaacatcctcat 48736256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 11593921 - 11593879
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  11593921 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 11593879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 31005184 - 31005142
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  31005184 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 31005142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 35906522 - 35906564
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  35906522 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 35906564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 37617905 - 37617863
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  37617905 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 37617863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.00000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 7814432 - 7814387
Alignment:
Q  9 ctatatcgtctaatcttatcacacattcaacgcaacatcctcatct 54  Q
    |||| ||||||| ||||||||||||||||||| |||||||||||||    
T  7814432 ctatttcgtctagtcttatcacacattcaacgtaacatcctcatct 7814387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 26016398 - 26016356
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||    
T  26016398 gtctagtcttaccacacatccaacgcaacatcctcatctctgc 26016356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 1210706 - 1210664
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  1210706 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 1210664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 9509279 - 9509237
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||||||| ||| |||| ||||||||||||||||||    
T  9509279 gtctagtcttatcactcatccaacacaacatcctcatctctgc 9509237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 9592695 - 9592653
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  9592695 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 9592653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 30202451 - 30202493
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  30202451 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 30202493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 43240702 - 43240744
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  43240702 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 43240744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 52633494 - 52633532
Alignment:
Q  17 tctaatcttatcacacattcaacgcaacatcctcatctc 55  Q
    |||| ||||| | ||||||||||||||||||||||||||    
T  52633494 tctagtcttaccgcacattcaacgcaacatcctcatctc 52633532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 5129162 - 5129198
Alignment:
Q  20 aatcttatcacacattcaacgcaacatcctcatctct 56  Q
    ||||||| |||||||||||||||||||||||||||||    
T  5129162 aatcttaccacacattcaacgcaacatcctcatctct 5129198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 6293690 - 6293732
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||||| ||| ||||||| |||| ||||||||||||||||||    
T  6293690 gtctaattttaccacacatccaacacaacatcctcatctctgc 6293732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 28085337 - 28085295
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  28085337 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 28085295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 27998384 - 27998343
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctg 57  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||    
T  27998384 gtctagtcttaccacacatccaacgcaacatcctcatctctg 27998343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 21952314 - 21952274
Alignment:
Q  14 tcgtctaatcttatcacacattcaacgcaacatcctcatct 54  Q
    ||||||| ||||| ||||||| |||||||||||||||||||    
T  21952314 tcgtctagtcttaccacacatgcaacgcaacatcctcatct 21952274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 33006625 - 33006582
Alignment:
Q  14 tcgtctaatcttatcacacattcaacgcaacatcctcatctctg 57  Q
    |||||||||||||  ||||||||||| |||||||||||| ||||    
T  33006625 tcgtctaatcttagaacacattcaacacaacatcctcatttctg 33006582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 1275226 - 1275184
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  1275226 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 1275184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 1287910 - 1287952
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  1287910 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 1287952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 10639258 - 10639216
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  10639258 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 10639216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 43558134 - 43558172
Alignment:
Q  15 cgtctaatcttatcacacattcaacgcaacatcctcatc 53  Q
    |||||| ||||| ||||||| ||||||||||||||||||    
T  43558134 cgtctagtcttaccacacatccaacgcaacatcctcatc 43558172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 9647927 - 9647968
Alignment:
Q  17 tctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    |||| ||||| ||||||| |||||||||||||||||||||||    
T  9647927 tctagtcttaccacacatccaacgcaacatcctcatctctgc 9647968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 45077709 - 45077670
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctc 55  Q
    ||||| ||||| ||||||| ||||||||||||||||||||    
T  45077709 gtctagtcttaccacacatccaacgcaacatcctcatctc 45077670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 7825319 - 7825277
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||||||| |||||||||||||| ||||||||    
T  7825319 gtctagtcttaccacacatccaacgcaacatcctaatctctgc 7825277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 36183412 - 36183370
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  36183412 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 36183370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.00000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 30456538 - 30456574
Alignment:
Q  22 tcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  30456538 tcttaccacacatccaacgcaacatcctcatctctgc 30456574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 39953588 - 39953627
Alignment:
Q  19 taatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    |||||||| ||||||| ||||||||||| |||||||||||    
T  39953588 taatcttaccacacatccaacgcaacattctcatctctgc 39953627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 36395271 - 36395313
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  36395271 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 36395313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 39760745 - 39760787
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    |||||||| || ||||||| |||| ||||||||||||||||||    
T  39760745 gtctaatcctaccacacatccaacacaacatcctcatctctgc 39760787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 39946818 - 39946776
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  39946818 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 39946776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.00000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 18966514 - 18966474
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctct 56  Q
    ||||||||||| ||||||| |||||||||||| ||||||||    
T  18966514 gtctaatcttaccacacatccaacgcaacatcttcatctct 18966474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 40933223 - 40933255
Alignment:
Q  22 tcttatcacacattcaacgcaacatcctcatct 54  Q
    ||||| |||||||||||||||||||||||||||    
T  40933223 tcttaccacacattcaacgcaacatcctcatct 40933255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 31403340 - 31403383
Alignment:
Q  15 cgtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    |||||||||| | |||||||||||| ||||||| ||||||||||    
T  31403340 cgtctaatctcaccacacattcaactcaacatcatcatctctgc 31403383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 290112 - 290150
Alignment:
Q  14 tcgtctaatcttatcacacattcaacgcaacatcctcat 52  Q
    |||||||||| ||||||||||| ||| ||||||||||||    
T  290112 tcgtctaatcgtatcacacattaaacacaacatcctcat 290150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 12494711 - 12494669
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  12494711 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 12494669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 18499842 - 18499792
Alignment:
Q  8 tctatatcgtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||||| ||||||||||||| |||| ||||||| |||| |||||    
T  18499842 tctatctcgtctagtcttatcacacatccaacacaacatcttcatttctgc 18499792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 31960135 - 31960177
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  31960135 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 31960177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 33709880 - 33709838
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||||||| |||||||||||| ||||||||||    
T  33709880 gtctagtcttaccacacatccaacgcaacatcatcatctctgc 33709838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 56375251 - 56375209
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  56375251 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 56375209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 27; Significance: 0.0000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 46568077 - 46568035
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||||||| |||| ||||||||||||||||||    
T  46568077 gtctagtcttaacacacatccaacacaacatcctcatctctgc 46568035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 47542033 - 47542075
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  47542033 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 47542075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 51448030 - 51448072
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  51448030 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 51448072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 52138761 - 52138719
Alignment:
Q  16 gtctaatcttatcacacattcaacgcaacatcctcatctctgc 58  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  52138761 gtctagtcttaccactcatccaacgcaacatcctcatctctgc 52138719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6854 times since January 2019
Visitors: 9338