View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154-Insertion-2 (Length: 1084)
Name: NF0154-Insertion-2
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154-Insertion-2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 873; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 873; E-Value: 0
Query Start/End: Original strand, 8 - 1020
Target Start/End: Complemental strand, 47609732 - 47608716
Alignment:
| Q |
8 |
aaacatgatcttttgtatactaaagctcatcaaattgaaacttaaatgcacgaatgcctttcacgaattgaaacttgatattttatttcaaatgagtttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47609732 |
aaacatgatcttttgtatactaaagctcatcaaattgaaacttaaatgcacgaatgcctttcacgaattgaaacttgatattttatttcaaatgagtttt |
47609633 |
T |
|
| Q |
108 |
gtctgccattcaccaataccttaattatatcttatctagttttatcacacatctaatgcagcatcctcatctcgattattcttatttgaatatcaggtaa |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47609632 |
gtctgccattcaccaataccttaatcatatcttatctagttttattacacatctaatgcagcatcctcatctcgattattcttatttgaatataaggtaa |
47609533 |
T |
|
| Q |
208 |
caattaaaatcatttaagttgttaaactcttctattaacatcattaaggaaaagtaaagacagatgaactaagcttttctcagatattttacttgtgatt |
307 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
47609532 |
caatgaaaatcatttaagttgttaaactcttctattaacatcattaaggaaaagtaaagacagatgaactaagctttgctcggatattttacttgtgatt |
47609433 |
T |
|
| Q |
308 |
tataacctcatttattgaatttttgtttgataaattctctgtataattgagctttgggtcagttctattcaaaatgtgcttgcaatattatgtagttgct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47609432 |
tataacctcatttattgaatttttgtttgataaattctctgtataattgagctttgggttagttctattcaaaatgtgcttgcaatattatgtagttgct |
47609333 |
T |
|
| Q |
408 |
tatgatgaatttttgagttactagagagatgtttgacttagttcttggttttgtttcctctgcgtgatatgctatttcttttagcaactgaccgaattat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47609332 |
tatgatgaatttttgagttactagagagatgtttgacttagttcttggttttgtttcctctgtgtgatatgctatttcttttagcaactgaccgaattat |
47609233 |
T |
|
| Q |
508 |
tggcttgtttggttatgcgacacttcaagaaaaatcacgtcaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaat |
607 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
47609232 |
tggcttgtttggttatgcggcacttcaggaaaaatcacgttaaaaattcacatcaaagcaaaagcttgtatttgtagcttcatagtttccacattgaaat |
47609133 |
T |
|
| Q |
608 |
tacattgggacgtggtatttgtgtcttaaaatctaatccaaacactcactatatatctctttaatctcgttgtatgaaggcctatgctacaagggtaggg |
707 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47609132 |
tgcattgggacgtagtatttgtgtcttaaaatctaatccaaacactcactatatatctc-ttaatctcgttgtatgaaggcctatgctacaa-ggtaggg |
47609035 |
T |
|
| Q |
708 |
tatgctactagagtgggatttggtttgcagtttgttattgaaattagtgattaaatgctggtttggtattttgtttgtttgctgttc-----atttgt-- |
800 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
47609034 |
tatgctactagagtgggatttggtttgcagtttgttattgaaattagtgattaaatgctggtttggtattttgtttgtttgctgttcctgttaattgtta |
47608935 |
T |
|
| Q |
801 |
cattctgttttgtatacttaccgattcattgcatactggtttggatttcgtctatgagtctaagaagaatgcttattccattaacttgagtccactacat |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
47608934 |
tattctgttttgtatacttaccgattcattgcatactggtttggatttcgtctatgagtctaag-agaatgcttattccattaacttgagtccgctacat |
47608836 |
T |
|
| Q |
901 |
atcaaacgatgctataatattttatcatataatatttctcgctaactcattaatttctaaatcttttaaagcgtcttaaaacatataactccatgatttt |
1000 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47608835 |
atcaaacgatgccataatattttatcatataatatttcttgctaactcattaatttctagattttttaaagcgtcttaaaacatataactccatgatttt |
47608736 |
T |
|
| Q |
1001 |
ctaccatgtgactggaattt |
1020 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
47608735 |
ctaccatgtgactggaattt |
47608716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 349 - 481
Target Start/End: Complemental strand, 47604893 - 47604761
Alignment:
| Q |
349 |
tataattgagctttgggtcagttctattcaaaatgtgcttgcaatattatgtagttgcttatgatgaatttttgagttactagagagatgtttgacttag |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47604893 |
tataattgagctttgggtcagttctattcaaaatgtgcttgcaatattatttagttgcttatgatgaatttttgagttactagagagatgtttgacttag |
47604794 |
T |
|
| Q |
449 |
ttcttggttttgtttcctctgcgtgatatgcta |
481 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |
|
|
| T |
47604793 |
ttcttggttttgtttcctctgtgttatatgcta |
47604761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 670 - 853
Target Start/End: Complemental strand, 47604443 - 47604254
Alignment:
| Q |
670 |
aatctcgttgtatgaaggcctatgctacaagggtagggtatgctactagagtgggatttggtttgcagtttgttattgaaattagtgattaaatgctggt |
769 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
47604443 |
aatctctttgtatgaaggcctatgctacaagg-tagggtatgctactaaagtgggatttggtttgcagtttgctattgaaattagtgattgaatgctggt |
47604345 |
T |
|
| Q |
770 |
ttggtattttgtttgtttg------ctgttcatt-tgtcattctgttttgtatacttaccgattcattgcatactggtttggatttcgtct |
853 |
Q |
| |
|
|||||||||| ||| |||| ||||| ||| | |||||||||||||||||||| | |||||| ||||||||| || |||| |||| |
|
|
| T |
47604344 |
ttggtattttatttctttgtcattcctgttaattgttgcattctgttttgtatacttatcaattcatcacatactggtgtgcatttggtct |
47604254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 508 - 613
Target Start/End: Complemental strand, 19112684 - 19112579
Alignment:
| Q |
508 |
tggcttgtttggttatgcgacacttcaagaaaaatcacgtcaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaat |
607 |
Q |
| |
|
||||||| ||||||||||| ||| ||||| |||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
19112684 |
tggcttgcttggttatgcggcacatcaaggaaaatcacgttaaaaaatcacatcaaagcaaaagctcatatttgtagcttcataatttccaagttgaaat |
19112585 |
T |
|
| Q |
608 |
tacatt |
613 |
Q |
| |
|
| |||| |
|
|
| T |
19112584 |
tgcatt |
19112579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 403 - 463
Target Start/End: Complemental strand, 19991472 - 19991412
Alignment:
| Q |
403 |
ttgcttatgatgaatttttgagttactagagagatgtttgacttagttcttggttttgttt |
463 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |
|
|
| T |
19991472 |
ttgcatataatgaatttttgagttactagaaagatgcttgactttgttcttagttttgttt |
19991412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 19930102 - 19930179
Alignment:
| Q |
271 |
atgaactaagcttttctcagatattttact--tgtgatttataacct-catttattgaatttttgtttgataaattct |
345 |
Q |
| |
|
||||||||| |||| || |||||||||||| | |||| |||||||| |||||||||| |||||||||||| |||||| |
|
|
| T |
19930102 |
atgaactaatctttgctaagatattttactcttatgatatataaccttcatttattgagtttttgtttgattaattct |
19930179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 5e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 520 - 657
Target Start/End: Original strand, 19155022 - 19155159
Alignment:
| Q |
520 |
ttatgcgacacttcaagaaaaatcacgtcaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacg |
619 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||| || ||||| | |
|
|
| T |
19155022 |
ttatgcgacatttcaagaaaaattacgttaaaaattcacatcaaagcaaaagcttataattatagcttcatagtttccacgttgaaattgcaatgggagg |
19155121 |
T |
|
| Q |
620 |
tggtatttgtgtcttaaaatctaatccaaacactcact |
657 |
Q |
| |
|
||||||||| ||| |||| || |||||||||| |||| |
|
|
| T |
19155122 |
tggtatttgcgtcagaaaaactgatccaaacacccact |
19155159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 538 - 658
Target Start/End: Original strand, 36903636 - 36903756
Alignment:
| Q |
538 |
aaaatcacgtcaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacgtggtatttgtgtcttaaa |
637 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||||||| |||||||||||||||| |||||| || ||||| |||||||| |||||||| || || ||| |
|
|
| T |
36903636 |
aaaatcacgttagaaaatcacatcaaagcaaaagcttatatttgtagcttcataatttccaaattaaaattgcattgggaagtggtattcgtatcccaaa |
36903735 |
T |
|
| Q |
638 |
atctaatccaaacactcacta |
658 |
Q |
| |
|
| ||||| |||||||||||| |
|
|
| T |
36903736 |
agttaatcgaaacactcacta |
36903756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 541 - 655
Target Start/End: Complemental strand, 20909287 - 20909175
Alignment:
| Q |
541 |
atcacgtcaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacgtggtatttgtgtcttaaaatc |
640 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||| |||||||||| ||||| ||| || ||| ||||| |||||| | |||||||||||||| ||| | |
|
|
| T |
20909287 |
atcacgttaaaaaatcacatcaaaggaaaagcttatatttgtagc-tcataattt-caagttaaaattgcattggaaagtggtatttgtgtcgcaaaggc |
20909190 |
T |
|
| Q |
641 |
taatccaaacactca |
655 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
20909189 |
tgatccaaacactca |
20909175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 510 - 656
Target Start/End: Original strand, 33765004 - 33765150
Alignment:
| Q |
510 |
gcttgtttggttatgcgacacttcaagaaaaatcacgtcaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaatta |
609 |
Q |
| |
|
||||||||||||||| | || ||||| ||||| || | |||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| |
|
|
| T |
33765004 |
gcttgtttggttatgtggcaggtcaagtaaaattactttaaaaattcacatcaaagcaaaagctcagatttgtagcttcatagttttcacgttgaaattg |
33765103 |
T |
|
| Q |
610 |
cattgggacgtggtatttgtgtcttaaaatctaatccaaacactcac |
656 |
Q |
| |
|
||||||||||||||||| |||| |||| || |||||||| ||||| |
|
|
| T |
33765104 |
tattgggacgtggtatttatgtcccaaaagctgatccaaacgctcac |
33765150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 538 - 632
Target Start/End: Original strand, 13876788 - 13876882
Alignment:
| Q |
538 |
aaaatcacgtcaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacgtggtatttgtgtc |
632 |
Q |
| |
|
|||||||||| ||||| ||| || |||||||||||| |||||||| ||||||| |||||| || ||||| ||||| || |||||||||||||| |
|
|
| T |
13876788 |
aaaatcacgttaaaaaatcatataaaagcaaaagcttatatttgtaacttcataatttccaaattaaaattgcattgagaagtggtatttgtgtc |
13876882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 500
Target Start/End: Complemental strand, 4287778 - 4287698
Alignment:
| Q |
418 |
ttttgagttactagagagatgtttgacttagttcttggttttgtttcctctgcgtgatatgctatttcttttagcaactgacc |
500 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| || |||||| | | ||||||||||| ||||||||| ||||| |
|
|
| T |
4287778 |
ttttgatttactagagagatgtttgactttgttcttgggttgttttccttt--ctcatatgctatttgttttagcaattgacc |
4287698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 523 - 604
Target Start/End: Complemental strand, 11016928 - 11016847
Alignment:
| Q |
523 |
tgcgacacttcaagaaaaatcacgtcaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttga |
604 |
Q |
| |
|
||||||| ||||| |||||||||| |||| ||||||||||||||||||| |||||||||||||||| ||| || ||||| |
|
|
| T |
11016928 |
tgcgacatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagctaatatttgtagcttcataattttcaagttga |
11016847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 546973 - 546927
Alignment:
| Q |
128 |
ttaattatatcttatctagttttatcacacatctaatgcagcatcct |
174 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
546973 |
ttaatcatatcttatctagttttatcacacatccaacgcaacatcct |
546927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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