View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154-Insertion-4 (Length: 951)
Name: NF0154-Insertion-4
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 312 - 799
Target Start/End: Original strand, 40802081 - 40802563
Alignment:
| Q |
312 |
ctcagcctatagtttgtgtatgtataatgtataagcaattgtgcatgttcaaggacagtcctagcttcttaacaaatatgactcatttctcgaaaacttt |
411 |
Q |
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| T |
40802081 |
ctcagcctatagtttgtgtatgtataatgtataagcaattgtgcatgttcaaggacagtcctagcttcttaacaaatatgactcatttctcgaaaacttt |
40802180 |
T |
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| Q |
412 |
atgatgttcaaagaacctaaactcgttacattgaatgctacgaccaacttttttaatacaagttttttagataatacccttaaaaatgagaagagagagg |
511 |
Q |
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| T |
40802181 |
atgatgttcaaagaacctaaactcgttacattgaatgctacgaccaacttttttaatacaagttttttagataatacccttaaaaatgagaagagagagg |
40802280 |
T |
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| Q |
512 |
ggtcttgtacgtatagcttccccttcttaacaacctcccactattttcatctcaatattggggtagctattaggtggtggtccctaaccgatnnnnnnnc |
611 |
Q |
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| T |
40802281 |
ggtcttgtacgtatagcttccccttcttaacaacctcccactattttcatctcaatatcggggtagctattaggtggtggtccctaaccgataaaaaaac |
40802380 |
T |
|
| Q |
612 |
ccattgatgatgtcctaaaattagtgaatcacagttaacacatgatgatttgctttttattccnnnnnnnnnnnaatagtttagtagatagatttgattt |
711 |
Q |
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| T |
40802381 |
ccattgatgatgtcctaaaattagtgaaccacagttaacacatgataatttactttttattcttttttttttttaatagtttagtagata-----gattt |
40802475 |
T |
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| Q |
712 |
acacattttaaatataaggaagtaaagaatctgagatttaaatctcaacccctacaaatagtgtaaggtacatttatctgataacttt |
799 |
Q |
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| T |
40802476 |
acacattttaaatataaggaagtaaagaatctgagatttaaatctcgacccctacaaatagtgtaaggtacatttatctgataacttt |
40802563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 40801780 - 40802051
Alignment:
| Q |
8 |
atgcagatgaatgccatgttggttattatgataaacttcattgaagctgtttgtacacgaatgtaatgtaagcagtcttgttggctgccccgacgccgat |
107 |
Q |
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| T |
40801780 |
atgcagatgaatgccatgttggttattatgataaacttcattgaagctgtttgtac--gaatgtaatgtaaccagtcttgttggctgccccgacgccgat |
40801877 |
T |
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| Q |
108 |
caaagggtaagatcgctggctttgctctaatatatataacttatcgatctctctctcatttttaacatcaatataatggacttggattctctataacagc |
207 |
Q |
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| T |
40801878 |
caaagggtaagatcactagctttgctctaatatatataacttatcga--tctctctcatttttaacatcaatataatggacttggattctctataacagc |
40801975 |
T |
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| Q |
208 |
tgtat-ata-tggtacgtgcaacaatggtggagagagttagatctaagttgaaaaaattactctctcgagatctaaa |
282 |
Q |
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| T |
40801976 |
tgtatggtattggtacgtgcaacaa-ggtggagagagttagatctaagttgagaaaattactctctcaagatctaaa |
40802051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 799 - 948
Target Start/End: Original strand, 40802590 - 40802738
Alignment:
| Q |
799 |
tgagacaggttttcactataaatagttttttcctaataactttagtttgattgctcctgcttttgtgtgaacggggtttaattgtaagttgtaacctact |
898 |
Q |
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| T |
40802590 |
tgagacaggtttttgctgtaaatagctttttcctaataactttagtttgattgctcctgcttttatgtgaac--ggtttaattgtaagttgtaacctact |
40802687 |
T |
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| Q |
899 |
gataaatttcctc-aaaaagtaacctactgaaaatattgccgctttgtcag |
948 |
Q |
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| T |
40802688 |
gataaatttcctcaaaaaagtaacctactgaaaatattgccgctttgtcag |
40802738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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