View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154-Insertion-5 (Length: 974)

Name: NF0154-Insertion-5
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154-Insertion-5
NF0154-Insertion-5
[»] chr5 (11 HSPs)
chr5 (6-974)||(12114940-12115908)
chr5 (84-519)||(12094252-12094689)
chr5 (302-392)||(12051016-12051106)
chr5 (79-205)||(41803809-41803935)
chr5 (313-396)||(12046806-12046889)
chr5 (13-59)||(12094198-12094244)
chr5 (289-437)||(11984265-11984410)
chr5 (75-185)||(22101941-22102051)
chr5 (340-381)||(12014097-12014138)
chr5 (75-132)||(38394433-38394490)
chr5 (340-386)||(11929660-11929706)
[»] chr7 (1 HSPs)
chr7 (844-970)||(43848773-43848898)
[»] chr8 (4 HSPs)
chr8 (680-816)||(40862270-40862406)
chr8 (68-139)||(10184630-10184701)
chr8 (78-207)||(6354656-6354784)
chr8 (87-135)||(43932132-43932180)
[»] chr2 (7 HSPs)
chr2 (78-200)||(7833300-7833422)
chr2 (75-141)||(22857809-22857875)
chr2 (81-138)||(7833293-7833350)
chr2 (66-135)||(9152462-9152531)
chr2 (84-145)||(12486065-12486126)
chr2 (84-141)||(37076222-37076279)
chr2 (83-144)||(41120030-41120090)
[»] chr1 (4 HSPs)
chr1 (78-183)||(2855093-2855198)
chr1 (68-183)||(26070859-26070974)
chr1 (59-142)||(34662757-34662840)
chr1 (94-183)||(47946036-47946125)
[»] chr3 (3 HSPs)
chr3 (108-183)||(14197740-14197815)
chr3 (83-207)||(19649592-19649716)
chr3 (108-141)||(36750820-36750853)
[»] chr4 (1 HSPs)
chr4 (65-133)||(53225729-53225797)


Alignment Details
Target: chr5 (Bit Score: 901; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 901; E-Value: 0
Query Start/End: Original strand, 6 - 974
Target Start/End: Original strand, 12114940 - 12115908
Alignment:
Q  6 cattaaaattatctcggagggaaaatcaatacaactcgcagtatttatatgttctctatattatactttctccgatcttatttataacaaacaatcgact 105  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12114940 cattaaaattatctcggagggaaaatcaattcaactcgcagtatttatatgttctctatattatactttctccgatcttatttataacaaacaatcgact 12115039  T
Q  106 tgttagattcattgaatagttaatgtatctgatctatatttcagatgggatacaacaattaaacaatgaatctaaaaaattgattgtttcgtataaatag 205  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  12115040 tgttagatttattgaatagttaatgtatctgatctatatttcagaggggatacaacaattaagcaatgaatctaaaaaattgattgtttcctataaatag 12115139  T
Q  206 gaggaagtagcaattacatttcaacacataccttgctgcagtttatctagattgatttttaaagttttgccataaaccactgacaagtgactccatgcat 305  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12115140 gaggaagtagcaattacatttcaatacataccttgctgcagtttatctagattgatttttaaagttttgccataaaccactgacaagtgactccatgcat 12115239  T
Q  306 ctttggctaattcaaaatgacaaagctcttcctgaatctgtcgtccacatgatagttgaataatatgcaaagcttttgcattcttcatcttaaatgaaac 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12115240 ctttggctaattcaaaatgacaaagctcttcctgaatctgtcgtccacatgatagttgaataatatgcaaagcttttgcattcttcatcttaaatgaaac 12115339  T
Q  406 ctctctttgacaagcttcagaaacactttggtgagcgtcaacgattcctttgaaatatttaccatatcgatccgttacattgttatcaaaagatattaca 505  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12115340 ctctctttgacaagcttcagaaacactttggtgagcgtcaacgagtcctttgaaatatttaccatatcgatccgttacattgttatcaaaagatattaca 12115439  T
Q  506 ggaaaaagagtgtgtatacatgattatttctgaagagagacatttacaattttatgttagtggcaatgaatctcaatatttataatgaaaacaataatgc 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12115440 ggaaaaagagtgtgtatacatgattatttctgaagagagacatttacaattttatgttagtggcaatgaatctcaatatttataatgaaaacaataatgc 12115539  T
Q  606 tagattaagagaaatcaaaattcgtggaatttagcggacgcgttggcacctttttgtccatttgatttcatataattgtttgattaactgctaaatccaa 705  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12115540 tagattaagagaaatcaaaactcgttgaatttagcggacgcgttggcacctttttgtccatttgatttcatataattgtttgattaactgctacatccaa 12115639  T
Q  706 aaattataggaacaacaaccccgttttttacgagcatgcatgattttaagtggccatacagtagttcgcgagaccttcactacaaaatctctcgggagat 805  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  12115640 aaattataggaacaacaaccccgttttttacgagcatgcatgattttaagtggccatacagtagttcgcgaggccttcactacaaaatctctcgagagat 12115739  T
Q  806 atagcactactgtgatgaaaaatgcttaatgtcatgacaaacacttgcacaaattttaatgaatggtcaatattctatttgtttttaaaatccaactagt 905  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12115740 atagcactactgtaatgaaaaatgcttaatgtcacgacaaacacttgcacaaattttaacgaatggtcaatattctatttgtttttaaaatccaactagt 12115839  T
Q  906 taaactgaatttctaaaaagtaaagtaaatgccaccatttcccgtaactttttcaaggctttttggtgc 974  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  12115840 taaactgaatttctaaaaagtaaagtaaatgccaccatttcccataactttttcaaggctttctggtgc 12115908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 84 - 519
Target Start/End: Original strand, 12094252 - 12094689
Alignment:
Q  84 tatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatctatatttcagatgggatacaacaattaaacaatgaatctaaaaa 183  Q
    ||||||||| |||||||| |||| ||||||| ||| ||||||| |||||| || ||||||||| |||   ||||||||||||||||||||| | ||||||    
T  12094252 tatttataagaaacaatcaactttttagatttattaaatagttgatgtatgtggtctatattttagaccagatacaacaattaaacaatgatt-taaaaa 12094350  T
Q  184 attgattgtttcgtataaatag-----gaggaagtagcaattacatttcaacacataccttgctgcagtttatctagattgatttttaaagttttgccat 278  Q
    ||| |||||||| |||||||||     |||||| || |||||||||||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  12094351 attaattgtttcttataaatagaacaggaggaaataccaattacatttcaatacataccttgctcaagtttatctagattgatttttaatgttttgccat 12094450  T
Q  279 aaaccactgacaagtgactccatgcatctttggctaattcaaaatgacaaagctcttcctgaatctgtcgtccacatgatagttgaataatatgcaaagc 378  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  12094451 aaaccactgataagtgactccatgaatctttggctaattcaaaatgacaaagctcatcctgaatttgtcgtccacatgatagttgaataatatgcaaagc 12094550  T
Q  379 ttttgcattcttcatcttaaatgaaacctctctttgacaagcttcagaaacactttggtgagcgtcaacgattcctttgaaatatttaccatatcgatcc 478  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||| |    
T  12094551 ttttgcattcttcatcttaaatgaaacctctctttgaccggcttcagaaacactttggtgaatgtcgacgattcctttgaaatatttaccatatcgat-c 12094649  T
Q  479 gttacattgttatcaaaagatattacaggaaaaagagtgtg 519  Q
     ||||||||| ||| |||||||||| |||||||||||||||    
T  12094650 attacattgtaatc-aaagatattagaggaaaaagagtgtg 12094689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 12051106 - 12051016
Alignment:
Q  302 gcatctttggctaattcaaaatgacaaagctcttcctgaatctgtcgtccacatgatagttgaataatatgcaaagcttttgcattcttca 392  Q
    |||||||||||||||||||||| | ||||||| || |||||| || |||||||||||||||||||| ||||||||||||||||||| ||||    
T  12051106 gcatctttggctaattcaaaatcagaaagctcatcttgaatcagtggtccacatgatagttgaatagtatgcaaagcttttgcattattca 12051016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 41803935 - 41803809
Alignment:
Q  79 gatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatctatatttcagatgggatacaacaattaaacaatgaatct 178  Q
    |||| ||||||||| ||| ||| ||||| ||||||| |||||| |||  |||||||||||  ||||||||  | |||||||  |||||||||||||||||    
T  41803935 gatcctatttataaaaaataattgactttttagatttattgaagagtagatgtatctgataaatatttcaactcggatacacaaattaaacaatgaatct 41803836  T
Q  179 aaaaaattgattgtttcgtataaatag 205  Q
    ||||  |  |||||||| |||||||||    
T  41803835 aaaacgtcaattgtttcttataaatag 41803809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 313 - 396
Target Start/End: Complemental strand, 12046889 - 12046806
Alignment:
Q  313 taattcaaaatgacaaagctcttcctgaatctgtcgtccacatgatagttgaataatatgcaaagcttttgcattcttcatctt 396  Q
    ||||||||||| | |||| || |||||||| |   || ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  12046889 taattcaaaatcagaaagatcatcctgaattttctgttcacatgatagttgaataatatgcaaagcttttgcattattcgtctt 12046806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 12094198 - 12094244
Alignment:
Q  13 attatctcggagggaaaatcaatacaactcgcagtatttatatgttc 59  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  12094198 attatcttggagggaaaatcaatacaactcacagtatttatatgttc 12094244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 289 - 437
Target Start/End: Complemental strand, 11984410 - 11984265
Alignment:
Q  289 caagtgactccatgcatctttggctaattcaaaatgacaaagctcttcctgaatctgtcgtccacatgatagttgaataatatgcaaagcttttgcattc 388  Q
    ||||||| ||||||| ||  | |||| || ||||||| ||| ||| ||||||||  ||  ||||||||||| |||||| |||||||||||||| ||||||    
T  11984410 caagtgattccatgcttcgctagctattttaaaatgaaaaatctcatcctgaatgcgttttccacatgatatttgaatgatatgcaaagctttcgcattc 11984311  T
Q  389 ttcatcttaaatgaaacctctctttgacaagcttcagaaacactttggt 437  Q
    ||| ||||  | ||||| |||||||  ||| ||| ||||||||||||||    
T  11984310 ttcttcttccaagaaacttctcttt--caa-ctttagaaacactttggt 11984265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 22102051 - 22101941
Alignment:
Q  75 ctccgatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatctatatttcagatgggatacaacaattaaacaatga 174  Q
    |||||||| ||||||||| ||| | | ||||| || |||| |||| |||  |||||||| |||||||||||| |||   ||||||  ||||| |||||||    
T  22102051 ctccgatcatatttataagaaatatttgacttttttgatttattgtataaataatgtatttgatctatattttagacaagatacattaattacacaatga 22101952  T
Q  175 atctaaaaaat 185  Q
    |||||||||||    
T  22101951 atctaaaaaat 22101941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 12014097 - 12014138
Alignment:
Q  340 aatctgtcgtccacatgatagttgaataatatgcaaagcttt 381  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  12014097 aatctctcgtccacatgatagttgaatgatatgcaaagcttt 12014138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 38394433 - 38394490
Alignment:
Q  75 ctccgatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgta 132  Q
    |||||||| ||||||||| ||| ||| ||||| |||||||||||||||| ||||||||    
T  38394433 ctccgatcctatttataagaaaaaattgactttttagattcattgaataattaatgta 38394490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 11929660 - 11929706
Alignment:
Q  340 aatctgtcgtccacatgatagttgaataatatgcaaagcttttgcat 386  Q
    ||||| ||||||||||| ||||||||| |||||||||||||| ||||    
T  11929660 aatctctcgtccacatgctagttgaatgatatgcaaagctttcgcat 11929706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 844 - 970
Target Start/End: Complemental strand, 43848898 - 43848773
Alignment:
Q  844 aaacacttgcacaaattttaatgaatggtcaatattctatttgtttttaaaatccaactagttaaactgaatttctaaaaagtaaagtaaatgccaccat 943  Q
    ||||||| |||||||||| || ||||| |||||||||| ||| |||||||| || |||||||||||||||||||||||||||||||||||| ||||||||    
T  43848898 aaacactagcacaaatttaaacgaatgatcaatattctttttttttttaaa-tctaactagttaaactgaatttctaaaaagtaaagtaaacgccaccat 43848800  T
Q  944 ttcccgtaactttttcaaggctttttg 970  Q
     |||| |||||||||||||||||||||    
T  43848799 ctcccataactttttcaaggctttttg 43848773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 680 - 816
Target Start/End: Complemental strand, 40862406 - 40862270
Alignment:
Q  680 attgtttgattaactgctaaatccaaaaattataggaacaacaaccccgttttttacgagcatgcatgattttaagtggccatacagtagttcgcgagac 779  Q
    ||||||| | ||||||||| |||||||||||||||||||| |||||||||||| | ||| || | ||||||||||  || |||||| |||||||| ||      
T  40862406 attgtttaactaactgctacatccaaaaattataggaacatcaaccccgttttgtccgaccaggtatgattttaatcgggcatacaatagttcgcaagcg 40862307  T
Q  780 cttcactacaaaatctctcgggagatatagcactact 816  Q
    |||| |||||||||||||| | |||||||||||||||    
T  40862306 cttcgctacaaaatctctcagtagatatagcactact 40862270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 10184701 - 10184630
Alignment:
Q  68 atactttctccgatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatc 139  Q
    |||||| |||||||| ||||||||| ||| ||||||||| |||||||||||||||| || |||||| |||||    
T  10184701 atacttcctccgatcatatttataagaaaaaatcgactttttagattcattgaataattgatgtatatgatc 10184630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 6354656 - 6354784
Alignment:
Q  78 cgatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatctatatttcagatgggatacaacaattaaacaatgaatc 177  Q
    |||| |||||||||| ||| ||| || || || |||| |||||||| ||||||||| |||| ||||||  |||| | |||||  |||||  |||||||||    
T  6354656 cgatattatttataagaaataat-gaattttttgatttattgaataattaatgtatatgatatatattctagatcgaatacataaattattcaatgaatc 6354754  T
Q  178 taaaaaattgattgtttcgtataaatagga 207  Q
    ||||||||| ||| |||| |||||||||||    
T  6354755 taaaaaattaattatttcttataaatagga 6354784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 43932180 - 43932132
Alignment:
Q  87 ttataacaaacaatcgacttgttagattcattgaatagttaatgtatct 135  Q
    |||||| ||||||| ||||| |||||||||||||||| |||||||||||    
T  43932180 ttataagaaacaattgactttttagattcattgaataattaatgtatct 43932132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 7833422 - 7833300
Alignment:
Q  78 cgatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatctatatttcagatgggatacaacaattaaacaatgaatc 177  Q
    ||||||||| ||||| ||||| |  | || ||||||| ||| ||||||||||||||||||||||||||| | ||  |||||| ||||||  |||||||||    
T  7833422 cgatcttatatataagaaacacttaattttttagatttattaaatagttaatgtatctgatctatattttaaatcagatacatcaattattcaatgaatc 7833323  T
Q  178 taaaaaattgattgtttcgtata 200  Q
    |||||||||||||||||| ||||    
T  7833322 taaaaaattgattgtttcttata 7833300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 22857809 - 22857875
Alignment:
Q  75 ctccgatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatcta 141  Q
    |||||||||||  || || ||||||| ||||| |||||| ||||||||| || ||||||||||||||    
T  22857809 ctccgatcttaaatacaagaaacaattgactttttagatacattgaataatttatgtatctgatcta 22857875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 7833293 - 7833350
Alignment:
Q  81 tcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgat 138  Q
    |||||| ||||| |||||||| | || |||||||||||||||| || |||||||||||    
T  7833293 tcttatatataagaaacaatcaattttttagattcattgaataattgatgtatctgat 7833350  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 9152531 - 9152462
Alignment:
Q  66 ttatactttctccgatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatct 135  Q
    |||||||  ||||| ||||||||| || ||||||| ||||| ||||||||||||| || || ||||||||    
T  9152531 ttatactccctccggtcttatttacaagaaacaattgactttttagattcattgagtaattgatgtatct 9152462  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 12486126 - 12486065
Alignment:
Q  84 tatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatctatatt 145  Q
    |||||| || ||||||| ||||| |||||||||||||||| || |||||| || ||||||||    
T  12486126 tatttacaagaaacaattgactttttagattcattgaataattgatgtatttggtctatatt 12486065  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 37076279 - 37076222
Alignment:
Q  84 tatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatcta 141  Q
    ||||||||| ||||||||||||| ||||||| |||| ||| || ||||||||| ||||    
T  37076279 tatttataagaaacaatcgactttttagatttattggataattgatgtatctggtcta 37076222  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 41120090 - 41120030
Alignment:
Q  83 ttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatctatat 144  Q
    |||||||||| ||||||| ||||| ||| ||| |||||||| |||||||||||| |||||||    
T  41120090 ttatttataagaaacaattgactt-ttatatttattgaataattaatgtatctggtctatat 41120030  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 2855093 - 2855198
Alignment:
Q  78 cgatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatctatatttcagatgggatacaacaattaaacaatgaatc 177  Q
    |||| |||||||||| ||||||| ||||| ||| ||| |||||| || | || ||| |||| ||||||| ||| |||||| | ||||||||||||||||     
T  2855093 cgattttatttataagaaacaattgactttttaaatttattgaagagatgatttatttgatatatattttagacgggatatatcaattaaacaatgaatt 2855192  T
Q  178 taaaaa 183  Q
    ||||||    
T  2855193 taaaaa 2855198  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 183
Target Start/End: Complemental strand, 26070974 - 26070859
Alignment:
Q  68 atactttctccgatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatctatatttcagatgggatacaacaattaa 167  Q
    ||||| |||||| |||||||||||| ||||| |  |||| || ||||||||| |||  |||||||| || ||||||||  ||||  |||||| ||||||     
T  26070974 atactctctccggtcttatttataagaaacattttacttttttgattcattgcataaataatgtatttggtctatattctagataagatacatcaattac 26070875  T
Q  168 acaatgaatctaaaaa 183  Q
     |||||||||||||||    
T  26070874 tcaatgaatctaaaaa 26070859  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 34662840 - 34662757
Alignment:
Q  59 ctctatattatactttctccgatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatctat 142  Q
    |||||| |||||||  ||||| |||||| ||||| |||||||  |||| || |||||||||||||||| |||||| || |||||    
T  34662840 ctctattttatactccctccggtcttatatataagaaacaatttacttttttgattcattgaatagttgatgtatttggtctat 34662757  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 47946125 - 47946036
Alignment:
Q  94 aaacaatcgacttgttagattcattgaatagttaatgtatctgatctatatttcagatgggatacaacaattaaacaatgaatctaaaaa 183  Q
    ||||||||||||| |||| ||||||| ||| || |||||| || ||| ||||  |||| |||||||| |||||   ||||||||||||||    
T  47946125 aaacaatcgactttttaggttcattggataatttatgtatgtggtctttattctagatcggatacaataattatttaatgaatctaaaaa 47946036  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 14197740 - 14197815
Alignment:
Q  108 ttagattcattgaatagttaatgtatctgatctatatttcagatgggatacaacaattaaacaatgaatctaaaaa 183  Q
    |||||||||||||| |||| ||||||||| | |||||| ||||  ||||||| |||| || |||||||||||||||    
T  14197740 ttagattcattgaagagttgatgtatctggtatatattacagactggatacatcaatcaagcaatgaatctaaaaa 14197815  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 19649592 - 19649716
Alignment:
Q  83 ttatttataacaaacaatcgacttgttagattcattgaatagttaatgtatctgatctatatttcagatgggatacaacaattaaacaatgaatctaaaa 182  Q
    ||||||| || ||||| | ||||| || ||||||||||||| || |||||| |  ||||||||| |||  | ||||| ||||||  ||||||||||||||    
T  19649592 ttatttacaagaaacatttgacttttttgattcattgaataattgatgtatttagtctatattttagaccgaatacatcaattactcaatgaatctaaaa 19649691  T
Q  183 aattgattgtttcgtataaatagga 207  Q
    |||  | |||||| | |||||||||    
T  19649692 aatcaaatgtttcttgtaaatagga 19649716  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 36750853 - 36750820
Alignment:
Q  108 ttagattcattgaatagttaatgtatctgatcta 141  Q
    ||||||||||||| ||||||||||||||||||||    
T  36750853 ttagattcattgagtagttaatgtatctgatcta 36750820  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 53225797 - 53225729
Alignment:
Q  65 attatactttctccgatcttatttataacaaacaatcgacttgttagattcattgaatagttaatgtat 133  Q
    ||||||||  ||||| || ||||||||| ||| ||| ||||| |||||||||||||||| |||||||||    
T  53225797 attatactccctccggtcctatttataagaaaaaattgactttttagattcattgaataattaatgtat 53225729  T

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