View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154-Insertion-7 (Length: 727)

Name: NF0154-Insertion-7
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154-Insertion-7
NF0154-Insertion-7
[»] chr8 (2 HSPs)
chr8 (164-727)||(10419675-10420245)
chr8 (8-126)||(10420244-10420362)


Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 164 - 727
Target Start/End: Complemental strand, 10420245 - 10419675
Alignment:
Q  164 cttaagggaccgaagtgtctaccgtttgtaacttatgggaccaaaacgaaacaaataaaatttaaaggaccaatgtgaagtctacaaataactcaagcga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10420245 cttaagggaccgaagtgtctaccgtttgtaacttatgggaccaaaacgatacaaataaaatttaaaggacaaatgtgaagtctacaaataactcaagcga 10420146  T
Q  264 ccaaaagcgtattttagcgtgcaaaatatttagtttggaggatcggaaaggtactctgtcctagaaaaggagggtctgcttttgactcaacttcagtcta 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10420145 ccaaaagcgtattttagcgtgcaaaatatttagtttggaggatcggaaaggtactctgtcctagaaaaggagggtctgcttttgactcaacttcagtcta 10420046  T
Q  364 ggtagtcaataattggtaatctgctgctattttatggctgcctactttattactgcctattttttaattttggtgaatatcactgcgcatttttaaatat 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10420045 ggtagtcaataattggtaatctgctgctattttatggctgcctactttattactgcctattttttaattttggtgaatatcactgtgcatttttaaatat 10419946  T
Q  464 ttacttagttgataacttctatcattgtatgggttgggggttgaacattgtttttattctgat-------tggtagcccaaaattgtgtaaaacattgac 556  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||    
T  10419945 ttacttagttgataacttctatcattctatgggttgggggttgaacattgtttttattgtgatatatatctggtagcccaaaattgtgtaaaacattgac 10419846  T
Q  557 cactgtgtaattcattttatcaattttattttatactaataatctctgcatctgtaggtcgtgatggacttcagagttgggagtcaaatgatgcagctct 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10419845 cactgtgtaattcattttatcaattttattttatactaataatctctgcatctgtaggtcgtgatggacttcagagttgggagtcaaatgatgcagctct 10419746  T
Q  657 ttaaggttacggcagtgtgctcctatttgtaaatttctgtaccatgcgaataaacaaagtcagagacatgg 727  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10419745 ttaaggttacggcagtgtgctcctatttgtaaatttctgtaccatgcgaataaacaaagtcagagacatgg 10419675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 10420362 - 10420244
Alignment:
Q  8 atactttggtcccttaagctacaaatattagatattttggtcccttaattacaaatatcagtcactttggtcctttctgtcaatgtctaaaatttgtaat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10420362 atactttggtcccttaagctacaaatattagatattttggtcccttaattacaaatatcagtcactttggtcctttctgtcaatgtctaatatttgtaat 10420263  T
Q  108 ttaaaggatcaaagtgtct 126  Q
    |||||||||||||||||||    
T  10420262 ttaaaggatcaaagtgtct 10420244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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