View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154-Insertion-8 (Length: 702)

Name: NF0154-Insertion-8
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154-Insertion-8
NF0154-Insertion-8
[»] chr3 (6 HSPs)
chr3 (7-393)||(29005718-29006103)
chr3 (421-620)||(29006103-29006304)
chr3 (668-702)||(13241872-13241906)
chr3 (668-702)||(29007145-29007179)
chr3 (668-702)||(54835282-54835316)
chr3 (667-701)||(41072908-41072942)
[»] chr7 (2 HSPs)
chr7 (668-702)||(6951032-6951066)
chr7 (668-702)||(12333669-12333703)
[»] chr4 (1 HSPs)
chr4 (668-702)||(18187023-18187057)
[»] chr5 (1 HSPs)
chr5 (668-701)||(39507200-39507233)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 393
Target Start/End: Original strand, 29005718 - 29006103
Alignment:
Q  7 actaagaagatgcagtgaaacttgtgtgtggaagttatagtataccaaggaagttgctttgatagtactaaatgtgtgtgaaattgaacacatggttgtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29005718 actaagaagatgcagtgaaacttgtgtgtggaagttatagtataccaaggaagttgctttgatagtactaaatgtgtgtgaaattgaacacatggttgtt 29005817  T
Q  107 gtatagttgacctctaattattaatttcgtgtttcaggccaccatgtacatgttgtggtataacacaactatgatattttcgatttgatgcaaacataaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||  |||||||||    
T  29005818 gtatagttgacctctaattattaatttcgtgtttcaggccaccatgtacatgttgtggtata--acaactatgatattttcgatttgatttaaacataaa 29005915  T
Q  207 ttcgcaaaataataacaatagtaatacta-nnnnnnnnaaagaaataacaataataatatatatgcaagcaataatatttttgatttgatatcaacataa 305  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29005916 ttcgcaaaataataacaatagtaatactattttttttaaaagaaataacaataataatatatatgcaagcaataatatttttgatttgatatcaacataa 29006015  T
Q  306 tttatgccaaaagtctctctctatattcctttaaaacgagggatcatcgttttgggcttgacttagatgatagaaacattatataata 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  29006016 tttatgccaaaagtctctctctatattcctttaaaacgagggatcattgttttgggcttgactcagttgatagaaacattatataata 29006103  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 421 - 620
Target Start/End: Original strand, 29006103 - 29006304
Alignment:
Q  421 acatccacttattcacttataaaagataaatttctaacaactaaattacttnnnnnnnc--cgagagatcactacacacgacatatgatggcccctacct 518  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| || ||          |||||||||||||||||||||||| ||||| ||||||||    
T  29006103 acatccacttaatcacttataaaagataaatttctaacaactaaactatttgaaaaaaaaacgagagatcactacacacgacataagatgggccctacct 29006202  T
Q  519 tcctcatctctgcagaaatcatgcgcacattctcaatagagattggaatttggggccccctccccattcctggtagttaattgcctaaattgggttcctc 618  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  29006203 tcctcatctctgcagaaatcatgcgcccattctcaatatagattggaatttgggcccccctccccattcctggtagttaattgcctaaattggtttcctc 29006302  T
Q  619 at 620  Q
    ||    
T  29006303 at 29006304  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 702
Target Start/End: Complemental strand, 13241906 - 13241872
Alignment:
Q  668 gtattcaccttatcaatatctcaaatccattatgg 702  Q
    |||||||||||||||||||||||||||||||||||    
T  13241906 gtattcaccttatcaatatctcaaatccattatgg 13241872  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 702
Target Start/End: Original strand, 29007145 - 29007179
Alignment:
Q  668 gtattcaccttatcaatatctcaaatccattatgg 702  Q
    |||||||||||||||||||||||||||||||||||    
T  29007145 gtattcaccttatcaatatctcaaatccattatgg 29007179  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 702
Target Start/End: Complemental strand, 54835316 - 54835282
Alignment:
Q  668 gtattcaccttatcaatatctcaaatccattatgg 702  Q
    |||||||||||||||||||||||||||||||||||    
T  54835316 gtattcaccttatcaatatctcaaatccattatgg 54835282  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 667 - 701
Target Start/End: Original strand, 41072908 - 41072942
Alignment:
Q  667 ggtattcaccttatcaatatctcaaatccattatg 701  Q
    ||||||||||||||||||||| |||||||||||||    
T  41072908 ggtattcaccttatcaatatcccaaatccattatg 41072942  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 702
Target Start/End: Complemental strand, 6951066 - 6951032
Alignment:
Q  668 gtattcaccttatcaatatctcaaatccattatgg 702  Q
    |||||||||||||||||||||||||||||||||||    
T  6951066 gtattcaccttatcaatatctcaaatccattatgg 6951032  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 702
Target Start/End: Original strand, 12333669 - 12333703
Alignment:
Q  668 gtattcaccttatcaatatctcaaatccattatgg 702  Q
    |||||||||||||||||||||||||||||||||||    
T  12333669 gtattcaccttatcaatatctcaaatccattatgg 12333703  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 702
Target Start/End: Original strand, 18187023 - 18187057
Alignment:
Q  668 gtattcaccttatcaatatctcaaatccattatgg 702  Q
    |||||||||||||||||||||||||||||||||||    
T  18187023 gtattcaccttatcaatatctcaaatccattatgg 18187057  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 701
Target Start/End: Complemental strand, 39507233 - 39507200
Alignment:
Q  668 gtattcaccttatcaatatctcaaatccattatg 701  Q
    ||||||||||||||||||||||||||||||||||    
T  39507233 gtattcaccttatcaatatctcaaatccattatg 39507200  T

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