View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154-Insertion-9 (Length: 608)

Name: NF0154-Insertion-9
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154-Insertion-9
NF0154-Insertion-9
[»] chr5 (1 HSPs)
chr5 (72-608)||(42025686-42026220)
[»] chr3 (1 HSPs)
chr3 (72-222)||(1252895-1253045)


Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 72 - 608
Target Start/End: Original strand, 42025686 - 42026220
Alignment:
Q  72 catattcaccccattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatactttcattctgagagtatagttccacatgagctacca 171  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42025686 catattcaccctattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatacttttattctgagagtatagttccacatgagctacca 42025785  T
Q  172 aataaggtaactcaccttcatttctactactttgatattcacacaggcaataacccaagtgcagttgttgtggcacgtgctaaccaaataagtgacattc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42025786 aataaggtaactcaccttcatttctactactttgatattcacacaggcaataacccaagtgcagttgttgtggcacgtgctaaccaaacaagtgacattc 42025885  T
Q  272 ctaagaaacattcattgtttggtactgtttatgccattgacaatcctcttagggaaggtcctgaagaaacatcaaatgtggttggaaatgcacaagatct 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  42025886 ctaagaaacattcattgtttggtactgtttatgccattgacaatcctcttagggaaggtcctgaagaaacatcaaatgtagttggaaatgcacaaggtct 42025985  T
Q  372 ttatgtggcatctctagccaaagtgaagatgtgacacttactatgtatgttgattatgctttcacctctggtgaattaaatggaagctcctttagtgttc 471  Q
    ||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42025986 ttatgtggca--tctagccagagtgaagatgtgacacttactatgtatgttgattatgctttcacctctggtgaattaaatggaagctcctttagtgttc 42026083  T
Q  472 tttcgaggaatccggtgagggaaccgacgagggaactcgcggtggtcggaggaagaggaatgtttaggatggccactggttttgctcagattagggctca 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42026084 tttcgaggaatccggtgagggaaccgacgagggaactcgcggtggtcggaggaagaggaaagtttaggatggccactggttttgctcagattagggctca 42026183  T
Q  572 ttttcttaatgctacaactggtgatgggatcattgag 608  Q
    ||||||||||||||||||||||||||||||| |||||    
T  42026184 ttttcttaatgctacaactggtgatgggatcgttgag 42026220  T

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Target: chr3 (Bit Score: 143; Significance: 8e-75; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 1252895 - 1253045
Alignment:
Q  72 catattcaccccattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatactttcattctgagagtatagttccacatgagctacca 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1252895 catattcaccccattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatactttcattctgagaatatagttccacatgagctacca 1252994  T
Q  172 aataaggtaactcaccttcatttctactactttgatattcacacaggcaat 222  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1252995 aataagggaactcaccttcatttctactactttgatattcacacaggcaat 1253045  T

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