View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_1D_high_3 (Length: 472)

Name: NF0154_1D_high_3
Description: NF0154_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_1D_high_3
NF0154_1D_high_3
[»] chr6 (3 HSPs)
chr6 (128-449)||(15965765-15966092)
chr6 (3-88)||(33801831-33801917)
chr6 (51-88)||(18139349-18139386)
[»] chr4 (6 HSPs)
chr4 (3-88)||(11094740-11094826)
chr4 (20-88)||(35788012-35788081)
chr4 (10-88)||(52980200-52980279)
chr4 (3-88)||(39592104-39592189)
chr4 (3-88)||(47668418-47668504)
chr4 (3-81)||(29687791-29687871)
[»] scaffold0025 (1 HSPs)
scaffold0025 (3-88)||(56512-56599)
[»] chr8 (8 HSPs)
chr8 (10-80)||(41522542-41522613)
chr8 (3-88)||(7486293-7486378)
chr8 (3-88)||(10052320-10052405)
chr8 (1-66)||(45541717-45541782)
chr8 (24-88)||(117263-117328)
chr8 (21-88)||(13363410-13363478)
chr8 (1-63)||(37276039-37276101)
chr8 (89-121)||(8395021-8395053)
[»] chr2 (3 HSPs)
chr2 (3-88)||(21010312-21010398)
chr2 (10-51)||(7983526-7983567)
chr2 (38-88)||(29424462-29424512)
[»] chr7 (5 HSPs)
chr7 (10-80)||(4167675-4167746)
chr7 (7-88)||(14108889-14108971)
chr7 (7-88)||(14418846-14418928)
chr7 (3-88)||(38406233-38406319)
chr7 (3-63)||(40930645-40930705)
[»] chr1 (6 HSPs)
chr1 (21-88)||(30551421-30551489)
chr1 (22-88)||(27689503-27689570)
chr1 (3-81)||(52742790-52742869)
chr1 (22-88)||(37624403-37624470)
chr1 (3-80)||(44977421-44977498)
chr1 (89-126)||(52741480-52741517)
[»] chr5 (1 HSPs)
chr5 (10-80)||(7426865-7426936)
[»] chr3 (5 HSPs)
chr3 (3-88)||(32979304-32979389)
chr3 (89-130)||(51824114-51824155)
chr3 (6-88)||(8371436-8371518)
chr3 (3-88)||(47765655-47765741)
chr3 (21-88)||(34902826-34902894)
[»] scaffold0051 (1 HSPs)
scaffold0051 (18-66)||(39730-39779)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 128 - 449
Target Start/End: Original strand, 15965765 - 15966092
Alignment:
Q  128 aaatattaatagagttgggaggctaacttgata-tgagttgcaaaaataaaaaccaattgagtggtttactcacttttattgctttgttgagtaatctag 226  Q
    |||||||||||||||| | |  ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15965765 aaatattaatagagttag-acactaacttgataatgacttgcaaaaataaaaaccaattgagtggtttactcacttttattgctttgttgagtaatctag 15965863  T
Q  227 aaaaataatagaataannnnnnnnn-catgtttaaaaataaatgatttatttagttttagacttcttggagactttgttgtcggttcttttgttga-cac 324  Q
    ||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | |    
T  15965864 aaaaataatagaataaatttttttttcatgtttaaaaataaatgatttatttagttttagacttcttagagactttgctgtcggttcttttgttgacctc 15965963  T
Q  325 attattaaaattcttttgtaa---ggtaaaatctatctttccaaacgtagctccagtttcggcttcccagttttggtaaaaat--ccaatctcaaaagac 419  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||  |||||||||||||||    
T  15965964 attattaaaattcttttgtaaaagggtaaaatctatctttccaaacgtagctccagtttgggctt-ccagttttggtaaaaatagccaatctcaaaagac 15966062  T
Q  420 agcctgcaaatattgtaaaagggttataag 449  Q
    ||||||||||||||||||||||||||||||    
T  15966063 agcctgcaaatattgtaaaagggttataag 15966092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 33801831 - 33801917
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||||| ||| |||||||| |  ||||||||||||| ||| ||| |||||||||||| ||||||||||||||| |||||    
T  33801831 gaagatgaagaaaggtgaaaaaaatatcaagtgttggtggtttataataaaaaacaatagaccctacatgatccaacaatcctcttt 33801917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 18139349 - 18139386
Alignment:
Q  51 aaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  18139349 aaatacaatagaccctacatgatccaacaatcctcttt 18139386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 11094826 - 11094740
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||    
T  11094826 gaagatgaagaaaggtgagaaaaatattaggtgttggtggtttacaataaaatacaatagaccttacatgatccaacaatcctcttt 11094740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 35788081 - 35788012
Alignment:
Q  20 agaaaaatattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 88  Q
    ||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  35788081 agaaaaatattaggtgttggtgatttacaataaaatgcaatagaccctgcatgatccaacaatcatcttt 35788012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 52980279 - 52980200
Alignment:
Q  10 aagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| || ||| ||||||||||| |||||    
T  52980279 aagaaaggtgagaaaaatattaggtgttggtggtttacaataaaatacaatagactctacataatccaacaatcctcttt 52980200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 39592104 - 39592189
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||| ||| ||||||||||||||| |||||    
T  39592104 gaagaagaagaaaggtgagaaaaatattaggtgttggtggtttacaataaaatataataga-cctacatgatccaacaatcctcttt 39592189  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 47668418 - 47668504
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||||  ||| || ||||||| ||||| |||||| ||| |||| ||||||||||||| ||||||| ||||||| |||||    
T  47668418 gaagatgaagaaaagtgaaaagaatattaaatgttagtggttcacactaaaatacaatagaccctacatgatcgaacaatcctcttt 47668504  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 29687791 - 29687871
Alignment:
Q  3 gaagatgaagaaagctgagaaaaata-ttagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaat 81  Q
    |||||||||||||  ||||||||| | |||| || | |||||| |||||||| ||||||||||| | ||||||||||||||    
T  29687791 gaagatgaagaaaagtgagaaaaaaaattaggtggtagtggttcacaataaaatacaatagaccttacatgatccaacaat 29687871  T

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Target: scaffold0025 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 56512 - 56599
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatag-accctgcatgatccaacaatcatcttt 88  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| || || | |||||||||||||||||||    
T  56512 gaagatgaagaaaggtgagaaaaatattaggtgttggtggtttacaataaaatacaatagaacactacgtgatccaacaatcatcttt 56599  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 41522542 - 41522613
Alignment:
Q  10 aagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaa 80  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||    
T  41522542 aagaaaggtgagaaaaatattaggtgttggtggtttacaataaaatacaatagaccctacatcatccaacaa 41522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 7486378 - 7486293
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||||||| | |  |||||| ||||||| |||||    
T  7486378 gaagatgaagaagg-tgagaaaaatattaggtgttggtggtttacaataaaatacaatagatcttatatgatctaacaatcctcttt 7486293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 10052405 - 10052320
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||||  ||||||||| ||||| || | |||||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  10052405 gaagatgaagaaaagtgagaaaaa-attaggtggtagtggttcacagtaaaatacaatagaccctacatgatccaacaatcatcttt 10052320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 45541782 - 45541717
Alignment:
Q  1 atgaagatgaagaaagctgagaaaaatattagatgttggtggtttacaataaa-tacaatagaccct 66  Q
    |||||||||||||||| ||||||||||||||||| || |||||||||| |||| |||||||||||||    
T  45541782 atgaagatgaagaaag-tgagaaaaatattagatattagtggtttacagtaaagtacaatagaccct 45541717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 117328 - 117263
Alignment:
Q  24 aaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||| |||||||||||||||||| |||||||||||| |||  |||||||||||||| |||||    
T  117328 aaatattaaatgttggtggtttacaataaaatacaatagatcctatatgatccaacaatcctcttt 117263  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 13363410 - 13363478
Alignment:
Q  21 gaaaaatattagatgttggtggtttaca-ataaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||| |||| |||||| ||| | |||||||||||||||| ||||||||||||||| |||||    
T  13363410 gaaaaatattaggtgttagtggttcacacaaaaatacaatagaccctacatgatccaacaatcctcttt 13363478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37276039 - 37276101
Alignment:
Q  1 atgaagatgaagaaagctgagaaaaatattagatgttggtggtttacaataaa-tacaatagac 63  Q
    |||||||||||||||| ||||||||||||||| |||| |||||| ||| |||| ||||||||||    
T  37276039 atgaagatgaagaaag-tgagaaaaatattaggtgttagtggttcacagtaaagtacaatagac 37276101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 8395053 - 8395021
Alignment:
Q  89 aaaataagttaagagacgaaatgatatattaag 121  Q
    ||||||||||||||||| |||||||||||||||    
T  8395053 aaaataagttaagagaccaaatgatatattaag 8395021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 21010312 - 21010398
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||||  ||||||||||||||| |||| |||||| | ||| |||||||||||||||| | |||||||||||| ||||||    
T  21010312 gaagatgaagaaaagtgagaaaaatattaggtgttagtggttcataataaaatacaatagaccctacctgatccaacaattatcttt 21010398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 7983526 - 7983567
Alignment:
Q  10 aagaaagctgagaaaaatattagatgttggtggtttacaata 51  Q
    ||||||| ||||||||||||||| ||||||||||||||||||    
T  7983526 aagaaaggtgagaaaaatattaggtgttggtggtttacaata 7983567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 29424462 - 29424512
Alignment:
Q  38 ggtggtttacaataaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||||||||  |||||||| | ||||||||||||||| |||||    
T  29424462 ggtggtttacaataaattaaatagaccttacatgatccaacaatcctcttt 29424512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 4167746 - 4167675
Alignment:
Q  10 aagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaa 80  Q
    ||||||| ||||||||||||||| ||| ||||||||||||| |||||||| ||||||| ||| |||||||||    
T  4167746 aagaaaggtgagaaaaatattaggtgtcggtggtttacaataaaatacaacagaccctacatcatccaacaa 4167675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 14108889 - 14108971
Alignment:
Q  7 atgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||| |||||||||||||   ||||||| ||||||||| ||||| |||||| ||| ||||||||||||||| |||||    
T  14108889 atgaagaaaggtgagaaaaatatttagtgttggttgtttacaataaaatataatagatcctacatgatccaacaatcctcttt 14108971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 14418846 - 14418928
Alignment:
Q  7 atgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||| |||||||||||||   ||||||| ||||||||| ||||| |||||| ||| ||||||||||||||| |||||    
T  14418846 atgaagaaaggtgagaaaaatatttagtgttggttgtttacaataaaatataatagatcctacatgatccaacaatcctcttt 14418928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 38406319 - 38406233
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||||| |||| |||||||| | ||| | ||||||||||| |||||||||||||  |  |||||||||||||| |||||    
T  38406319 gaagatgaagaaaggtgaggaaaatatttggtgtggatggtttacaataaaatacaatagactttaaatgatccaacaatcctcttt 38406233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 40930705 - 40930645
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagac 63  Q
    |||||||||||||| |||||||||||| || ||||||||||||| ||| |||||||||||||    
T  40930705 gaagatgaagaaaggtgagaaaaatataag-tgttggtggtttataataaaatacaatagac 40930645  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 30551421 - 30551489
Alignment:
Q  21 gaaaaatattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||| |||| |||||| ||| |||| ||||||||||||| ||||||||||||||| |||||    
T  30551421 gaaaaatattaggtgttagtggttcacactaaaatacaatagaccctacatgatccaacaatcctcttt 30551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 27689570 - 27689503
Alignment:
Q  22 aaaaatattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 88  Q
    ||||||||||| |||| |||||| ||| |||| ||||||||||||| |||||||||||||| ||||||    
T  27689570 aaaaatattaggtgttagtggttcacactaaaatacaatagaccctacatgatccaacaattatcttt 27689503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 52742790 - 52742869
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaat 81  Q
    |||||||||||||| ||||||||||||||| |||  |||||||||| | |||||||||||| |||   ||||||||||||    
T  52742790 gaagatgaagaaaggtgagaaaaatattaggtgtcagtggtttacagtaaaatacaatagatcctttgtgatccaacaat 52742869  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 37624403 - 37624470
Alignment:
Q  22 aaaaatattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 88  Q
    ||||||||||| |||| |||||| ||| |||| ||||||||||||| |||||| |||||||| |||||    
T  37624403 aaaaatattaggtgttagtggttcacactaaaatacaatagaccctacatgattcaacaatcctcttt 37624470  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 44977498 - 44977421
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaa 80  Q
    |||||||||||||  ||||||||| ||||| || | |||||| ||||| |||||||||||||||| ||||||| |||||    
T  44977498 gaagatgaagaaaagtgagaaaaa-attaggtggtagtggttcacaattaaatacaatagaccctacatgatcaaacaa 44977421  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 52741517 - 52741480
Alignment:
Q  89 aaaataagttaagagacgaaatgatatattaagtcttt 126  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  52741517 aaaataagttaagggaccaaatgatatattaagtcttt 52741480  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 7426936 - 7426865
Alignment:
Q  10 aagaaagctgagaaaaatattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaa 80  Q
    ||||||| ||||||||||||||| || |||| ||||||||| ||||||| |||||||| ||| |||||||||    
T  7426936 aagaaaggtgagaaaaatattaggtgatggtagtttacaataaaatacagtagaccctacatcatccaacaa 7426865  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 32979389 - 32979304
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||||| |||||||| |||||| |||| ||| ||||||||||| ||||||| ||||| ||| || ||||| ||||||||    
T  32979389 gaagatgaagaaag-tgagaaaagtattaggtgttagtgatttacaataaagtacaatataccctacataattcaacagtcatcttt 32979304  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 51824155 - 51824114
Alignment:
Q  89 aaaataagttaagagacgaaatgatatattaagtcttttaaa 130  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  51824155 aaaataagttaagagaccaaatgatatattaagttttttaaa 51824114  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 8371518 - 8371436
Alignment:
Q  6 gatgaagaaagctgagaaaaatattagatgttggtggtttacaata-aatacaatagaccctgcatgatccaacaatcatcttt 88  Q
    ||||||||||  |||||||| |||||| |||| ||||||||||||| ||||||||||||  |  |||||||||||||| |||||    
T  8371518 gatgaagaaaagtgagaaaa-tattaggtgttagtggtttacaatagaatacaatagactatatatgatccaacaatcctcttt 8371436  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 47765741 - 47765655
Alignment:
Q  3 gaagatgaagaaagctgagaaaaatattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||||  ||| || |||||||  |||| |||||| ||  |||| ||||||||||||| ||||||||||||||| |||||    
T  47765741 gaagatgaagaaaagtgaaaagaatattaagtgttagtggttcacgctaaaatacaatagaccctacatgatccaacaatcctcttt 47765655  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 34902826 - 34902894
Alignment:
Q  21 gaaaaatattagatgttggtggtttacaataaata-caatagaccctgcatgatccaacaatcatcttt 88  Q
    |||||||||||| |||| |||||| ||| |||| | ||||| ||||| ||||||||||||||| |||||    
T  34902826 gaaaaatattaggtgttagtggttcacactaaaaaacaataaaccctacatgatccaacaatcctcttt 34902894  T

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Target: scaffold0051 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 39730 - 39779
Alignment:
Q  18 tgagaaaaatattagatgttggtggtttacaataaa-tacaatagaccct 66  Q
    |||||||||||||||||||| |||||| ||| |||| |||||||||||||    
T  39730 tgagaaaaatattagatgttagtggttcacagtaaagtacaatagaccct 39779  T

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