View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_1D_high_9 (Length: 233)
Name: NF0154_1D_high_9
Description: NF0154_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_1D_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 11643950 - 11643758
Alignment:
| Q |
41 |
ggagttgggagttggttatttctgttataactgtaaccaacaaagcttgtaccttcagctctatataagagcattctttccttttgaaataacaagttaa |
140 |
Q |
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| T |
11643950 |
ggagttgggagttggttatttctgttataactgtaaccaacaaagcttgtaccttcagctctatataatagcattctttccttttgaaataacaagttag |
11643851 |
T |
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| Q |
141 |
ttcattatgctatttttctttaccttacattcctaaaaccaacaacaccctagggttttaaatagtagtcgtggtaacacttgcggtcatatc |
233 |
Q |
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| T |
11643850 |
ttcattatgctatttttctttaccttacactcctaaaaccaacaacaccctagggttttaaatagtagtcgtggtaacacttgcggtcatatc |
11643758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 24624930 - 24625047
Alignment:
| Q |
53 |
tggttatttctgttataactgtaaccaacaaagcttgtaccttcagctctatataagagcattctttccttttgaaat-aacaagttaattcattatgct |
151 |
Q |
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||||||| ||||||||| |||||| ||| ||| ||||| ||||||||||||||||||||| ||| |||||||||| ||||||||| |||||| |||| |
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| T |
24624930 |
tggttatatctgttataggagtaacctacatagcctgtactttcagctctatataagagcatctttttcttttgaaataaacaagttatttcattctgct |
24625029 |
T |
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| Q |
152 |
atttttctttaccttaca |
169 |
Q |
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| T |
24625030 |
atttttctctaccttaca |
24625047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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