View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_1D_low_1 (Length: 595)
Name: NF0154_1D_low_1
Description: NF0154_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_1D_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 86 - 595
Target Start/End: Complemental strand, 932821 - 932312
Alignment:
| Q |
86 |
catcagacggtccaagcatgctcaattgatttacagaacaaaattttcctggattttcaccgatcaccttctcatatctatttttcaaattttgaactcg |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
932821 |
catcagacggtccaagcatgctcaattgatttacagaacaaaattttcctggattttcaccgatcaccttctcatatctatttttcaaattttgaactcg |
932722 |
T |
|
| Q |
186 |
agactgtatttctataatcttttgaatgatgtcattccaggacttgtcattatcataataatcctgagaataccgcaaatcaacagaagacttgaactct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
932721 |
agactgtatttctataatcttttgaatgatgtcattccaggacttgtcattatcataataatcctgagaataccgcaaatcaacagaagacttgaactct |
932622 |
T |
|
| Q |
286 |
accaaattttcaagttcagcacctgataacattaaaacgggatgtagcataagaagtcacgaactctcatgtaaacaaatgactaaaacctgtttctaag |
385 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
932621 |
accaaattttcaatttcagcacctgataacattaaaacgggatgtagcataagaagtcacgaactctcatgtaaacaaatgactaaaacctgtttctaag |
932522 |
T |
|
| Q |
386 |
agataccatatacttaaaatatgaaaatccagagaaaatctgtgtatcaaattctttgtactcatttcattaacaatgatgggtagagattttttgtaag |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
932521 |
agataccatatacttaaaatatgaaaatccagagaaaatctgtgtatcaaattctttgtactcatttcattaacaatgatgggtagagattttttgtaag |
932422 |
T |
|
| Q |
486 |
tcacataaataacaaaaacaacatcatatacatatctgctactaacctattgcaactttgtgactatctcccaaaccaacctcaacattacaatttgctt |
585 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
932421 |
tcgcataaataacaaaaacaacatcatatacatatctgctactaacctattgcaactttgtgactatctcccaaaccaacctcaacattacaatttgctt |
932322 |
T |
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| Q |
586 |
tctctggaaa |
595 |
Q |
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|||||||||| |
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| T |
932321 |
tctctggaaa |
932312 |
T |
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