View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_1D_low_10 (Length: 255)
Name: NF0154_1D_low_10
Description: NF0154_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_1D_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 29003476 - 29003355
Alignment:
| Q |
14 |
gaagaataagaagaagcctaataatcaagtcaatcataataatgaccagattatggctctatctcgtctttgaaagttttctataagtctttgtttattt |
113 |
Q |
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| T |
29003476 |
gaagaataataagaagcctaataatcaagtcaatcataataatgaccagattatggctctatctcgtctttgaaagttttctataagtctttgtttattt |
29003377 |
T |
|
| Q |
114 |
gaatagtgtgtgctgtgttgtg |
135 |
Q |
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|||||||||||||||||||||| |
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| T |
29003376 |
gaatagtgtgtgctgtgttgtg |
29003355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 127 - 249
Target Start/End: Original strand, 29005601 - 29005723
Alignment:
| Q |
127 |
tgtgttgtggttaagaatgagattaggggggtcatttatatagaaaatttcatgtgattgggaccaaaattgaaggccacgttatatgtgaagagagtgg |
226 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29005601 |
tgtgttgtggttaagaatgagattaggggggttatttatatagaaaatttcatgtgattgggaccaaaattgaaggccacgttatatgtgaagagggtgg |
29005700 |
T |
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| Q |
227 |
gaccattaattttagtgactaag |
249 |
Q |
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||||||||||||||||||||||| |
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| T |
29005701 |
gaccattaattttagtgactaag |
29005723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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