View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_1D_low_12 (Length: 240)

Name: NF0154_1D_low_12
Description: NF0154_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_1D_low_12
NF0154_1D_low_12
[»] scaffold0003 (2 HSPs)
scaffold0003 (5-235)||(42064-42296)
scaffold0003 (5-235)||(35394-35625)
[»] chr6 (4 HSPs)
chr6 (5-235)||(27445062-27445294)
chr6 (42-179)||(20909759-20909895)
chr6 (42-179)||(20924207-20924343)
chr6 (87-187)||(22081838-22081938)
[»] chr7 (3 HSPs)
chr7 (19-196)||(11504432-11504610)
chr7 (5-185)||(18939810-18939987)
chr7 (65-160)||(24760529-24760624)
[»] chr8 (2 HSPs)
chr8 (8-183)||(43227134-43227307)
chr8 (65-196)||(42312856-42312987)
[»] chr1 (1 HSPs)
chr1 (42-196)||(41326636-41326790)
[»] chr3 (3 HSPs)
chr3 (8-109)||(53689993-53690094)
chr3 (8-109)||(52310803-52310904)
chr3 (65-160)||(52127964-52128059)
[»] chr2 (1 HSPs)
chr2 (20-128)||(7828246-7828355)
[»] chr4 (2 HSPs)
chr4 (87-187)||(37618034-37618134)
chr4 (146-183)||(30180301-30180338)


Alignment Details
Target: scaffold0003 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 42296 - 42064
Alignment:
Q  5 gagtttggtgttaaaaagtgagcttgaaaatctatacaaagatgctatgagaaaatttagttcacttgctttttgaatcttcttagagtttggtgttcaa 104  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |    
T  42296 gagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatgagaacattgagttcacttgctttttgaatcttcttagagtttggtgttcta 42197  T
Q  105 tgttagaaaaaattaaaaccactactataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaagatatctaac 204  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||    
T  42196 tgttaaaaaaaattaaaaccactaccataggatgaagcaatagttttagaatcaaatgttgattgacaggaagatatatttattgtcgaagatgtctaac 42097  T
Q  205 tttcatccc--gtgtttgttgttatgttatatt 235  Q
    || |  |||  ||||||||||||||||||||||    
T  42096 ttgctgcccctgtgtttgttgttatgttatatt 42064  T

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Target: scaffold0003; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 35625 - 35394
Alignment:
Q  5 gagtttggtgttaaaaagtgagcttgaaaatctatacaaagatgctatgagaaaatttagttcacttgctttttgaatcttcttagagtttggtgttcaa 104  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |    
T  35625 gagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatgagaacattgagttcacttgctttttgaatcttctatgagtttggtgttcta 35526  T
Q  105 tgttagaaaaaattaaaaccactactataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaagatatctaac 204  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||    
T  35525 tgtta-aaaaaattaaaaccactaccataggatgaagcaatagttttagaatcaaatgttgattgacaggaagatatatttattgtcgaagatgtctaac 35427  T
Q  205 tttcatccc--gtgtttgttgttatgttatatt 235  Q
    || |  |||  ||||||||||||||||||||||    
T  35426 ttgctgcccctgtgtttgttgttatgttatatt 35394  T

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Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 27445062 - 27445294
Alignment:
Q  5 gagtttggtgttaaaaagtgagcttgaaaatctatacaaagatgctatgagaaaatttagttcacttgctttttgaatcttcttagagtttggtgttcaa 104  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |    
T  27445062 gagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatgagaacattgagttcacttgctttttgaatcttcttagagtttggtgttcta 27445161  T
Q  105 tgttagaaaaaattaaaaccactactataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaagatatctaac 204  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||    
T  27445162 tgttaaaaaaaattaaaaccactaccataggatgaagcaatagttttagaatcaaatgttgattgacaggaagatatatttattgtcgaagatgtctaac 27445261  T
Q  205 tttcatccc--gtgtttgttgttatgttatatt 235  Q
    || |  |||  ||||||||||||||||||||||    
T  27445262 ttgctgcccctgtgtttgttgttatgttatatt 27445294  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 20909895 - 20909759
Alignment:
Q  42 aaagatgctatgagaaaatttagttcacttgctttttgaatcttcttagagtttggtgttcaatgttagaaaaaattaaaaccactactataggatgaag 141  Q
    ||||| |||| ||||| ||| | ||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |||||||| | ||| |||||||    
T  20909895 aaagaggctacgagaacattgaattcacttgctttttgaatcttcttatagtttggtgttctaagttagaaaaaatt-aaaccactgccatatgatgaag 20909797  T
Q  142 caatagttttagaatcaaatgttgtttgacaggaagat 179  Q
    ||| |||||||||||||| ||||||| |||||||||||    
T  20909796 caagagttttagaatcaagtgttgttcgacaggaagat 20909759  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 20924343 - 20924207
Alignment:
Q  42 aaagatgctatgagaaaatttagttcacttgctttttgaatcttcttagagtttggtgttcaatgttagaaaaaattaaaaccactactataggatgaag 141  Q
    ||||| |||| ||||| ||| | ||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |||||||| | ||| |||||||    
T  20924343 aaagaggctacgagaacattgaattcacttgctttttgaatcttcttatagtttggtgttctaagttagaaaaaatt-aaaccactgccatatgatgaag 20924245  T
Q  142 caatagttttagaatcaaatgttgtttgacaggaagat 179  Q
    ||| |||||||||||||| ||||||| |||||||||||    
T  20924244 caagagttttagaatcaagtgttgttcgacaggaagat 20924207  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 22081838 - 22081938
Alignment:
Q  87 ttagagtttggtgttcaatgttagaaaaaattaaaaccactactataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttg 186  Q
    |||| ||||||||||| |||||  ||||||| |||||||||   ||||||||||| |  ||||||||||||||  ||||||||||| |||| ||||||||    
T  22081838 ttagggtttggtgttctatgtttaaaaaaatcaaaaccacttacataggatgaagtaggagttttagaatcaagcgttgtttgacatgaagttatctttg 22081937  T
Q  187 t 187  Q
    |    
T  22081938 t 22081938  T

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Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 11504432 - 11504610
Alignment:
Q  19 aaagtgagcttgaaaatctatacaaagatgctatgagaa-aatttagttcacttgctttttgaatcttcttagagtttggtgttcaatgttagaaaaaat 117  Q
    |||||||||||||||||||||| ||||| |||||||||  |||  | |||||||||||||||||| ||| ||||||||||||||| |||||| ||||| |    
T  11504432 aaagtgagcttgaaaatctatagaaagaggctatgagaccaatacaattcacttgctttttgaattttcctagagtttggtgttctatgttaaaaaaatt 11504531  T
Q  118 taaaaccactactataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaaga 196  Q
    |||||||||||| ||| |||||||||| |||||||||||||| |||||||||||| ||||||||||||||  |||||||    
T  11504532 taaaaccactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaatcgaaga 11504610  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 18939987 - 18939810
Alignment:
Q  5 gagtttggtgttaaaaagtgagcttgaaaatctatacaaagatgctatgagaa-aatttagttcacttgctttttgaatcttcttagagtttggtgttca 103  Q
    ||||| ||||||  |||||||||||||||||||||| ||||| |||||||||  ||   | |||||||||||||||||| ||||||||| || ||||||     
T  18939987 gagttcggtgtttcaaagtgagcttgaaaatctatagaaagaggctatgagaccaaaacaattcacttgctttttgaattttcttagaggtttgtgttct 18939888  T
Q  104 atgttagaaaaaattaaaaccactactataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatcttt 185  Q
    |||||| ||||    |||| |||||  ||| |||||| ||| |||||||||||||| |||||||||  ||||||||||||||    
T  18939887 atgttaaaaaa----aaaaacactaacatatgatgaatcaagagttttagaatcaagtgttgtttggaaggaagatatcttt 18939810  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 24760529 - 24760624
Alignment:
Q  65 ttcacttgctttttgaatcttcttagagtttggtgttcaatgttagaaaaaattaaaaccactactataggatgaagcaatagttttagaatcaaa 160  Q
    ||||||||| |||||| || | |||| ||||||||||| |||||| | ||||  ||||||||||| |||||||||||||   ||||||||| ||||    
T  24760529 ttcacttgcattttgattccttttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttagaaacaaa 24760624  T

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Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 43227134 - 43227307
Alignment:
Q  8 tttggtgttaaaaagtgagcttgaaaatctatacaaagatgctatgagaaaatttagttcacttgctttttgaatcttcttagagtttggtgttcaatgt 107  Q
    |||||||||| ||||||||||||| ||| |||| |||||||||||||||| ||| | |||||||| |||||||||||  || ||||||||||||| ||||    
T  43227134 tttggtgttacaaagtgagcttgagaatatatagaaagatgctatgagaacattgaattcacttgatttttgaatctcatt-gagtttggtgttctatgt 43227232  T
Q  108 tagaaaaaattaaaaccactactataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatct 183  Q
    || ||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||    
T  43227233 ta-aaaaaattaaaactactaccataggatgaagcaagagttttagaatcaagtgttctttgacaggaagatatct 43227307  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 42312987 - 42312856
Alignment:
Q  65 ttcacttgctttttgaatcttcttagagtttggtgttcaatgttagaaaaaattaaaaccactactataggatgaagcaatagttttagaatcaaatgtt 164  Q
    ||||||||||||||| ||||||||| |||||||||||| ||||||||||||| | |||||||| | ||| |||||||||| ||| |||||||||| ||||    
T  42312987 ttcacttgctttttgtatcttcttatagtttggtgttctatgttagaaaaaaattaaaccactgccatacgatgaagcaagagtattagaatcaagtgtt 42312888  T
Q  165 gtttgacaggaagatatctttgttgtcgaaga 196  Q
    ||| ||||||||||| ||| |||  |||||||    
T  42312887 gttcgacaggaagatctctctgtaatcgaaga 42312856  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 41326790 - 41326636
Alignment:
Q  42 aaagatgctatgagaaaatttagttcacttgctttttgaatcttcttagagtttggtgttcaatgttagaaaaaattaaaaccactactataggatgaag 141  Q
    ||||| ||||| |||| ||| | ||||||||||||||||||||||||| |||||||||||| ||||||||||||| | |||||||| | ||| |||||||    
T  41326790 aaagaggctataagaacattgaattcacttgctttttgaatcttcttatagtttggtgttctatgttagaaaaaaattaaaccactgccatatgatgaag 41326691  T
Q  142 caatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaaga 196  Q
    ||| |||||||||||||| | ||||| ||||||||||| ||| |||  |||||||    
T  41326690 caagagttttagaatcaagttttgttcgacaggaagatctctctgtaatcgaaga 41326636  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 53689993 - 53690094
Alignment:
Q  8 tttggtgttaaaaagtgagcttgaaaatctatacaaagatgctatgagaaaatttagttcacttgctttttgaatcttcttagagtttggtgttcaatgt 107  Q
    |||||||||  |||||||||||||||||||||| |||||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||| ||||    
T  53689993 tttggtgtttcaaagtgagcttgaaaatctatagaaagatgctatgagaacattgaattcactttctttttgaatcttcttagagtttggtgttctatgt 53690092  T
Q  108 ta 109  Q
    ||    
T  53690093 ta 53690094  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 52310904 - 52310803
Alignment:
Q  8 tttggtgttaaaaagtgagcttgaaaatctatacaaagatgctatgagaaaatttagttcacttgctttttgaatcttcttagagtttggtgttcaatgt 107  Q
    |||||||||  |||||||||||||||||||||| ||||| |||||||||| ||| | ||||||| |||||||||||||||||||||||||||||| ||||    
T  52310904 tttggtgtttcaaagtgagcttgaaaatctatagaaagaggctatgagaacattaaattcactttctttttgaatcttcttagagtttggtgttctatgt 52310805  T
Q  108 ta 109  Q
    ||    
T  52310804 ta 52310803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 52127964 - 52128059
Alignment:
Q  65 ttcacttgctttttgaatcttcttagagtttggtgttcaatgttagaaaaaattaaaaccactactataggatgaagcaatagttttagaatcaaa 160  Q
    ||||||||| |||||| || | |||| ||||||||||| |||||| | ||||  ||||||||||| |||||||||||||   ||||||||| ||||    
T  52127964 ttcacttgcattttgattccttttagggtttggtgttctatgttaaacaaaaccaaaaccactaccataggatgaagcaggggttttagaaacaaa 52128059  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 7828355 - 7828246
Alignment:
Q  20 aagtgagcttgaaaatctatacaaagatgctatgagaa-aatttagttcacttgctttttgaatcttcttagagtttggtgttcaatgttagaaaaaatt 118  Q
    |||||||||||| |||||||| ||||| |||||||||  ||   | |||||||||||||||||| ||||||||| || |||||| |||||| ||||||||    
T  7828355 aagtgagcttgacaatctatagaaagaggctatgagaccaaaacaattcacttgctttttgaattttcttagaggtttgtgttctatgttaaaaaaaatt 7828256  T
Q  119 aaaaccacta 128  Q
    ||||||||||    
T  7828255 aaaaccacta 7828246  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 37618134 - 37618034
Alignment:
Q  87 ttagagtttggtgttcaatgttagaaaaaattaaaaccactactataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttg 186  Q
    |||| ||||||||||| |||||  ||||||| |||||||||   ||||||||||| |  ||||||||||||||  ||||||||||| |||| ||||||||    
T  37618134 ttagggtttggtgttctatgtttaaaaaaatcaaaaccacttacataggatgaagaaggagttttagaatcaagcgttgtttgacatgaagttatctttg 37618035  T
Q  187 t 187  Q
    |    
T  37618034 t 37618034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 30180301 - 30180338
Alignment:
Q  146 agttttagaatcaaatgttgtttgacaggaagatatct 183  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  30180301 agttttagaatcaattgttgtttgacaagaagatatct 30180338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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