View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_1D_low_14 (Length: 230)

Name: NF0154_1D_low_14
Description: NF0154_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_1D_low_14
NF0154_1D_low_14
[»] chr5 (22 HSPs)
chr5 (24-230)||(38816733-38816932)
chr5 (159-230)||(19820432-19820503)
chr5 (159-226)||(22013364-22013431)
chr5 (159-230)||(42469171-42469242)
chr5 (184-230)||(15410486-15410532)
chr5 (181-230)||(6326335-6326384)
chr5 (174-227)||(15382442-15382495)
chr5 (159-226)||(2436878-2436939)
chr5 (198-230)||(6035472-6035504)
chr5 (181-225)||(21522722-21522766)
chr5 (181-225)||(21533288-21533332)
chr5 (181-227)||(21191097-21191143)
chr5 (198-228)||(27144452-27144482)
chr5 (181-227)||(36642803-36642849)
chr5 (157-226)||(37328886-37328955)
chr5 (198-230)||(3966492-3966524)
chr5 (159-227)||(6247572-6247640)
chr5 (198-230)||(11685928-11685960)
chr5 (191-227)||(14674251-14674287)
chr5 (198-230)||(17123037-17123069)
chr5 (174-230)||(21137654-21137710)
chr5 (159-227)||(30135264-30135331)
[»] chr7 (23 HSPs)
chr7 (159-230)||(27944991-27945062)
chr7 (159-227)||(24105629-24105696)
chr7 (181-230)||(11722136-11722185)
chr7 (159-230)||(2034392-2034462)
chr7 (174-230)||(1433419-1433475)
chr7 (154-230)||(7328729-7328805)
chr7 (198-230)||(32308109-32308141)
chr7 (159-227)||(43027510-43027578)
chr7 (174-230)||(43249958-43250014)
chr7 (183-230)||(2425771-2425818)
chr7 (172-227)||(24339605-24339660)
chr7 (184-227)||(26733279-26733322)
chr7 (183-230)||(49107795-49107842)
chr7 (192-230)||(8046065-8046103)
chr7 (184-230)||(19206025-19206071)
chr7 (192-230)||(23191879-23191917)
chr7 (198-230)||(6630950-6630982)
chr7 (198-230)||(20549780-20549812)
chr7 (198-230)||(22484014-22484046)
chr7 (198-230)||(25791642-25791674)
chr7 (174-230)||(26329420-26329476)
chr7 (202-230)||(28155563-28155591)
chr7 (202-230)||(29787407-29787435)
[»] chr6 (25 HSPs)
chr6 (174-229)||(9027143-9027198)
chr6 (159-227)||(853900-853968)
chr6 (159-227)||(8365560-8365628)
chr6 (161-227)||(12696277-12696342)
chr6 (159-227)||(3398569-3398637)
chr6 (174-230)||(5000664-5000720)
chr6 (181-229)||(10294079-10294127)
chr6 (159-230)||(6389693-6389764)
chr6 (183-230)||(9629357-9629404)
chr6 (159-230)||(30866182-30866253)
chr6 (184-230)||(9658854-9658900)
chr6 (196-230)||(19040339-19040373)
chr6 (174-227)||(7938081-7938134)
chr6 (174-227)||(7977871-7977924)
chr6 (174-227)||(9107411-9107464)
chr6 (185-230)||(13851712-13851757)
chr6 (174-227)||(16766662-16766715)
chr6 (174-230)||(5732548-5732604)
chr6 (191-230)||(20371148-20371187)
chr6 (181-227)||(426555-426601)
chr6 (193-230)||(7265631-7265668)
chr6 (182-227)||(8777014-8777059)
chr6 (174-227)||(34595099-34595152)
chr6 (191-227)||(17841630-17841666)
chr6 (174-230)||(34073385-34073441)
[»] chr8 (13 HSPs)
chr8 (159-227)||(25192388-25192456)
chr8 (159-227)||(126390-126457)
chr8 (176-227)||(29510345-29510396)
chr8 (168-230)||(926826-926888)
chr8 (181-227)||(22651948-22651994)
chr8 (172-229)||(24362241-24362298)
chr8 (181-230)||(27213519-27213568)
chr8 (159-227)||(13437005-13437073)
chr8 (191-230)||(31109556-31109595)
chr8 (201-230)||(39954317-39954346)
chr8 (159-227)||(4298927-4298994)
chr8 (159-227)||(11944615-11944683)
chr8 (194-230)||(31236615-31236651)
[»] chr2 (12 HSPs)
chr2 (159-223)||(33519736-33519800)
chr2 (159-227)||(20539715-20539783)
chr2 (159-230)||(21782856-21782927)
chr2 (159-227)||(19536439-19536507)
chr2 (158-230)||(23717976-23718047)
chr2 (158-230)||(24105648-24105719)
chr2 (184-230)||(21616737-21616783)
chr2 (160-225)||(21624217-21624282)
chr2 (158-227)||(14996265-14996333)
chr2 (174-226)||(4332891-4332943)
chr2 (174-230)||(18276486-18276542)
chr2 (158-227)||(21374740-21374810)
[»] chr1 (24 HSPs)
chr1 (174-227)||(40917716-40917769)
chr1 (175-227)||(398806-398858)
chr1 (182-230)||(6427323-6427371)
chr1 (182-230)||(2896159-2896207)
chr1 (158-230)||(5376538-5376609)
chr1 (159-227)||(5927381-5927449)
chr1 (167-230)||(10572627-10572690)
chr1 (172-227)||(48040503-48040558)
chr1 (190-230)||(12443498-12443538)
chr1 (198-230)||(17831569-17831601)
chr1 (198-230)||(36878450-36878482)
chr1 (159-230)||(39130805-39130876)
chr1 (181-227)||(1486750-1486796)
chr1 (184-230)||(9709795-9709841)
chr1 (184-230)||(34298411-34298457)
chr1 (181-230)||(1262856-1262905)
chr1 (182-227)||(48450628-48450673)
chr1 (198-230)||(609496-609528)
chr1 (198-230)||(3490428-3490460)
chr1 (191-227)||(18556497-18556533)
chr1 (198-230)||(19562659-19562691)
chr1 (159-219)||(34315663-34315722)
chr1 (174-230)||(38503285-38503341)
chr1 (191-227)||(46348424-46348460)
[»] scaffold0306 (1 HSPs)
scaffold0306 (158-230)||(13349-13421)
[»] scaffold0223 (1 HSPs)
scaffold0223 (159-227)||(20122-20190)
[»] scaffold0152 (1 HSPs)
scaffold0152 (158-230)||(21906-21978)
[»] chr3 (20 HSPs)
chr3 (159-230)||(8383207-8383278)
chr3 (159-225)||(8842280-8842346)
chr3 (174-230)||(24205079-24205135)
chr3 (168-227)||(10335327-10335386)
chr3 (174-227)||(28917966-28918019)
chr3 (174-230)||(4991005-4991061)
chr3 (190-230)||(5407285-5407325)
chr3 (159-227)||(55401025-55401093)
chr3 (172-230)||(5441069-5441128)
chr3 (160-227)||(8587062-8587129)
chr3 (183-230)||(9800014-9800061)
chr3 (191-230)||(21720746-21720785)
chr3 (160-230)||(32429418-32429488)
chr3 (174-227)||(15796335-15796388)
chr3 (182-227)||(26492246-26492291)
chr3 (182-230)||(2620091-2620139)
chr3 (191-227)||(3865597-3865633)
chr3 (191-227)||(10318075-10318111)
chr3 (158-230)||(14223891-14223962)
chr3 (159-227)||(25064859-25064927)
[»] scaffold0053 (1 HSPs)
scaffold0053 (174-227)||(8763-8816)
[»] scaffold0007 (1 HSPs)
scaffold0007 (174-230)||(225306-225362)
[»] scaffold0003 (1 HSPs)
scaffold0003 (174-226)||(241559-241611)
[»] scaffold0004 (1 HSPs)
scaffold0004 (192-230)||(92790-92828)
[»] scaffold0018 (2 HSPs)
scaffold0018 (162-227)||(178860-178925)
scaffold0018 (192-230)||(192287-192325)
[»] chr4 (11 HSPs)
chr4 (174-227)||(23293027-23293080)
chr4 (198-230)||(17345453-17345485)
chr4 (198-230)||(35723423-35723455)
chr4 (176-230)||(847918-847972)
chr4 (174-227)||(20633450-20633503)
chr4 (181-230)||(36635296-36635345)
chr4 (174-230)||(24343472-24343528)
chr4 (163-227)||(28084475-28084539)
chr4 (159-227)||(28720827-28720894)
chr4 (191-227)||(30298928-30298964)
chr4 (191-227)||(30327796-30327832)
[»] scaffold0652 (1 HSPs)
scaffold0652 (174-227)||(503-556)
[»] scaffold0475 (1 HSPs)
scaffold0475 (174-230)||(3281-3337)
[»] scaffold0103 (1 HSPs)
scaffold0103 (191-227)||(51793-51829)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 38816932 - 38816733
Alignment:
Q  24 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgcttgaattgaagcaataat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38816932 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgtttgaattgaagcaataat 38816833  T
Q  124 ttgagaaaatagaataattgaacggtaaccatatactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataat 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||    
T  38816832 ttgagaaaatagaataattgaacggtaaccatatactatgaagcactaatacggactcc-------gcacggatactgacacgccgacaccgctaataat 38816740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 19820503 - 19820432
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaa 19820432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 22013364 - 22013431
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttg 226  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttg 22013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 42469171 - 42469242
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||| | |||||| ||| ||||| |||||||| |||||||||||||| | ||||||||||||||    
T  42469171 ctatgaagcacggacacggacaccgaacacgacacggataatgacacgccgacacggataataatttgagaa 42469242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 15410532 - 15410486
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| |||||| |||||||||||||||||||||||||||| ||||    
T  15410532 gacacgacacggacactgacacgccgacaccgctaataatttaagaa 15410486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 6326384 - 6326335
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||| |||||| ||||||||||||||| ||||| |||||||||||    
T  6326384 ccggacacgacacggacactgacacgccgacatcgctagtaatttgagaa 6326335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 15382442 - 15382495
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| ||||||||| |||||| | |||||||||||||| |||||||||||||    
T  15382442 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttga 15382495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 2436878 - 2436939
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttg 226  Q
    |||||||||||| |||||||| ||||||||| |||      |||||||||||||||||||||||||||    
T  2436878 ctatgaagcacggatacggacaccggacacgacac------tgacacgccgacaccgctaataatttg 2436939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 6035472 - 6035504
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||||||||||||||||||||    
T  6035472 actgacacgccgacaccgctaataatttgagaa 6035504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 21522722 - 21522766
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataattt 225  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||    
T  21522722 ccggacacgacacggacactgacacgccgacacagctaataattt 21522766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 21533288 - 21533332
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataattt 225  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||    
T  21533288 ccggacacgacacggacactgacacgccgacacagctaataattt 21533332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 21191143 - 21191097
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||||| |||||| ||||||| |||||||| |||||||||||||    
T  21191143 ccggacacgacacggacactgacatgccgacacagctaataatttga 21191097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 27144452 - 27144482
Alignment:
Q  198 actgacacgccgacaccgctaataatttgag 228  Q
    |||||||||||||||||||||||||||||||    
T  27144452 actgacacgccgacaccgctaataatttgag 27144482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 36642849 - 36642803
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||||| |||||| |||||||||||||||| | |||||||||||    
T  36642849 ccggacacgacacggacactgacacgccgacacagttaataatttga 36642803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 37328955 - 37328886
Alignment:
Q  157 tactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttg 226  Q
    |||||||||||||| | |||||| ||| ||||| |||||| ||||| || ||||||| || |||||||||    
T  37328955 tactatgaagcacggacacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttg 37328886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 3966492 - 3966524
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||| |||||||||||||||||||||||||    
T  3966492 actgacatgccgacaccgctaataatttgagaa 3966524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 6247572 - 6247640
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||| |||| || ||||| |||||||||  ||| | ||||||||||||||||  ||||||||||||    
T  6247572 ctatgaaacacggatgcggacaccggacacgatacgcacactgacacgccgacacatctaataatttga 6247640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 11685928 - 11685960
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||| |||||||||||||||||||||||||    
T  11685928 actgacatgccgacaccgctaataatttgagaa 11685960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 14674251 - 14674287
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||||||||||||| |||||||||||||    
T  14674251 cacggacactgacacgccgacacagctaataatttga 14674287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 17123037 - 17123069
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||| |||||||||||||||||||||    
T  17123037 actgacacgccaacaccgctaataatttgagaa 17123069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 21137654 - 21137710
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| ||||||||  |||||| ||||||||||||||| || ||||||| ||||||    
T  21137654 acggacaccggacacaacacggacactgacacgccgacatcggtaataatctgagaa 21137710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 30135264 - 30135331
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||  |||||||| | ||||||| ||| ||||| |||||||||||||  ||||||||||||    
T  30135264 ctatgaagcacatatacggacac-ggacacgacacagataccgacacgccgacacaactaataatttga 30135331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 27944991 - 27945062
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaa 27945062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 24105629 - 24105696
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||| ||||||| | |||||||| |||||| |||||||||||||||| |||||||||||||    
T  24105629 ctatgaagcacggatacgga-tacggacacgacacggacactgacacgccgacacagctaataatttga 24105696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 11722185 - 11722136
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||||||||    
T  11722185 ccggacacgacacggacactgacacgccgacaccgctaacaatttgagaa 11722136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 2034392 - 2034462
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||| ||||||| | | |||||| |||||||||| ||||| ||||||| |||||||||||||||    
T  2034392 ctatgaagcacggatacgga-tactgacacgacacggatacttacacgtcgacaccactaataatttgagaa 2034462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 1433419 - 1433475
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| ||| ||||| |||||| | |||||||||||||||| ||||||||||||||    
T  1433419 acggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaa 1433475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 7328805 - 7328729
Alignment:
Q  154 atatactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||||||| |||||||| ||| ||||| ||| || | | ||||| ||| || ||||||||||||||||    
T  7328805 atatactatgaagcacggatacggacaccgaacacgacacagacattaacacgtcgatactgctaataatttgagaa 7328729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 32308109 - 32308141
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||||||||||||||||||||    
T  32308109 actgacacgccgacaccgctaataatttgagaa 32308141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 43027578 - 43027510
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||| || ||||| | ||||||| |||||| ||||||||| |||| | |||||||||||||    
T  43027578 ctatgaagcacggatgcggacactggacacgacacggacactgacacggcgacccagctaataatttga 43027510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 43249958 - 43250014
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| ||||||| | |||||| |||||||||||||||| | ||||||||||||||    
T  43249958 acggacaccggacaagacacggacactgacacgccgacacggataataatttgagaa 43250014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 2425818 - 2425771
Alignment:
Q  183 ggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||| ||| ||||||||||||||| ||||| ||||||||||||||    
T  2425818 ggacacgacacagatactgacacgccggcaccgttaataatttgagaa 2425771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 24339605 - 24339660
Alignment:
Q  172 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||| ||||||||| || ||| | |||||||||||||| |||||||||||||    
T  24339605 atacggacaccggacacgacatggacattgacacgccgacacagctaataatttga 24339660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 26733279 - 26733322
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||| ||||||||| ||||||||||||||||||||    
T  26733279 gacacgacacggacactgacacgtcgacaccgctaataatttga 26733322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 49107795 - 49107842
Alignment:
Q  183 ggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||| ||||||  ||||||| ||||||||||||||||||||||||    
T  49107795 ggacacgacacggactctgacacaccgacaccgctaataatttgagaa 49107842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 8046103 - 8046065
Alignment:
Q  192 acggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  8046103 acggatactgacacgccaacaccactaataatttgagaa 8046065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 19206025 - 19206071
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| |||||| ||  |||||||||||||||||||||||||||||    
T  19206025 gacacgacacggacaccaacacgccgacaccgctaataatttgagaa 19206071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 23191879 - 23191917
Alignment:
Q  192 acggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  23191879 acggacactgatacgccgacaccgctaataatttgagaa 23191917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 6630982 - 6630950
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||||||| |||||||||||||||    
T  6630982 actgacacgccgacaccactaataatttgagaa 6630950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 20549780 - 20549812
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||| ||||||||||||||||||||||||    
T  20549780 actgacacaccgacaccgctaataatttgagaa 20549812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 22484014 - 22484046
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||||||||||||||| ||||    
T  22484014 actgacacgccgacaccgctaataattttagaa 22484046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 25791642 - 25791674
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||||||||||||| |||||||||    
T  25791642 actgacacgccgacaccgctaattatttgagaa 25791674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 26329476 - 26329420
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| | ||||||| ||| || ||||||||||||||| || ||||||||||||||    
T  26329476 acggacactggacacgacacagacactgacacgccgacatcgttaataatttgagaa 26329420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 28155563 - 28155591
Alignment:
Q  202 acacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||||||||||||||||    
T  28155563 acacgccgacaccgctaataatttgagaa 28155591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 29787435 - 29787407
Alignment:
Q  202 acacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||||||||||||||||    
T  29787435 acacgccgacaccgctaataatttgagaa 29787407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 9027143 - 9027198
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgaga 229  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  9027143 acggactccggacacgacacggacactgacacgccgacaccgctaataatttgaga 9027198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 853968 - 853900
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||| |||| |||||||| ||||||||| ||||||| |||||||||||||||  ||||||||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttga 853900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 8365628 - 8365560
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||| |||||||| || |||||| |||||| ||||||||||||||||  ||||||||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttga 8365560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 12696277 - 12696342
Alignment:
Q  161 atgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||| |||||||| | ||||||| |||||| |||||||||||||||| |||||||||||||    
T  12696277 atgaagcacggatacggacac-ggacacgacacggacactgacacgccgacacagctaataatttga 12696342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 3398569 - 3398637
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||| | ||||||||  || ||||| |||||| |||||||||||||||| |||||||||||||    
T  3398569 ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataatttga 3398637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 5000720 - 5000664
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| ||||||| | |||||||||||||||| ||||||||||||||||| |||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaa 5000664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 10294079 - 10294127
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgaga 229  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||||||||    
T  10294079 ccggacacgacacggatactgacatgccgataccgctaataatttgaga 10294127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 6389693 - 6389764
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||| | || ||| ||||||||| |||||| ||| |||||||||||| | ||||||||||||||    
T  6389693 ctatgaagcacggacacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaa 6389764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 9629357 - 9629404
Alignment:
Q  183 ggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  9629357 ggacacgacacggatattgacacgccgacaccgccaataatttgagaa 9629404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 30866253 - 30866182
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||| |||||||||||| ||||||| | ||| || || ||||| || |||||||||||||||||||||    
T  30866253 ctatgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaa 30866182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 9658854 - 9658900
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| |||||| |||||||||||||||||||||||||||| ||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataatttaagaa 9658900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 19040339 - 19040373
Alignment:
Q  196 atactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||||||||||||||||||||||    
T  19040339 atactgacacgccgacaccgctaataatttgagaa 19040373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 7938081 - 7938134
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| ||||||||| || ||| |||||||||||||||| |||||||||||||    
T  7938081 acggacaccggacacgacatggacactgacacgccgacacagctaataatttga 7938134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 7977924 - 7977871
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| | ||||||| || |||||||||||||||||||| |||||||||||||    
T  7977924 acggacactggacacgacatggatactgacacgccgacacagctaataatttga 7977871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 9107464 - 9107411
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| ||||||||| |||||| ||| |||||||||||| |||||||||||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttga 9107411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 13851712 - 13851757
Alignment:
Q  185 acacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||    
T  13851712 acacgacacggacactgacacgtcgacaccgctaataatttgagaa 13851757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 16766662 - 16766715
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| ||||||||| || ||| |||||||||||||||| |||||||||||||    
T  16766662 acggacaccggacacgacatggacactgacacgccgacacagctaataatttga 16766715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 5732604 - 5732548
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| | ||||||| || ||| |||||||||||||||||| ||||||||||||||    
T  5732604 acggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaa 5732548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 20371187 - 20371148
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  20371187 cacggacattgacacgccgacaccgctaataatttgagaa 20371148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 426601 - 426555
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||||| |||||| |||||||||||||||| | |||||||||||    
T  426601 ccggacacgacacggacactgacacgccgacacagttaataatttga 426555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 7265668 - 7265631
Alignment:
Q  193 cggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  7265668 cggacactgacacgccaacaccgctaataatttgagaa 7265631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 8777059 - 8777014
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||| |||||| ||||||||||||||||  ||||||||||||    
T  8777059 cggacacgacacggacactgacacgccgacacaactaataatttga 8777014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 34595099 - 34595152
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| ||||||||| |||||| | ||||||||||||||  ||||||||||||    
T  34595099 acggacaccggacacgacacggacaatgacacgccgacacaactaataatttga 34595152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 17841666 - 17841630
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||||||||||||| |||||||||||||    
T  17841666 cacggacactgacacgccgacacagctaataatttga 17841630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 34073441 - 34073385
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| | ||||||| |||||| ||||||| ||| ||| |||||||||||||||||    
T  34073441 acggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaa 34073385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 25192456 - 25192388
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||||||||||||  ||||||||  ||||| |||||||||||||||| |||||||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataatttga 25192388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 126457 - 126390
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||| ||||| || | |||||||  ||||||||||||||||| ||||||||||||||||||    
T  126457 ctatgaagcacggatacgcacac-ggacacgatacggatactgacacgccaacaccgctaataatttga 126390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 29510396 - 29510345
Alignment:
Q  176 ggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||| ||||||||| |||||| |||||||||||||||| |||||||||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttga 29510345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 926888 - 926826
Alignment:
Q  168 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||| |||||| ||||||||| |||||| ||||||||||| ||||  |||||||||||||||    
T  926888 acgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaa 926826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 22651948 - 22651994
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||||    
T  22651948 ccggacacgacacggacactgacacgccgacacagctaataatttga 22651994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 24362298 - 24362241
Alignment:
Q  172 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttgaga 229  Q
    |||||||| ||||| ||| ||| || || |||||||||||||||||||||||||||||    
T  24362298 atacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgaga 24362241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 27213519 - 27213568
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||| ||||    
T  27213519 ccggacacgacacggatacagacacgccgacactgctaataatttcagaa 27213568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 13437073 - 13437005
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||| | | |||| ||||||| | || ||| |||||||||||||||| |||||||||||||    
T  13437073 ctatgaagcacggacatggacaccggacatgacatggacactgacacgccgacacagctaataatttga 13437005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 31109595 - 31109556
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  31109595 cacggacactgacacgccgacaccgttaataatttgagaa 31109556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 39954346 - 39954317
Alignment:
Q  201 gacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||||||||||||||||||||    
T  39954346 gacacgccgacaccgctaataatttgagaa 39954317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 4298994 - 4298927
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||| ||| |||| | ||||||| ||| |||||| |||||||||||| | |||||||||||    
T  4298994 ctatgaagcacggatatggacac-ggacacgacacagatactaacacgccgacacagttaataatttga 4298927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 11944615 - 11944683
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||  |||||||| ||  ||||| ||||||| || |||||||||||| | |||||||||||    
T  11944615 ctatgaagcacagatacggacaccaaacacgacacggatgctaacacgccgacactgttaataatttga 11944683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 31236651 - 31236615
Alignment:
Q  194 ggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  31236651 ggatacggacacgccgacactgctaataatttgagaa 31236615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 33519736 - 33519800
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataat 223  Q
    |||||||||||| |||||||| ||||||||| | ||||||||||||| |||||||||||||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 33519800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 20539783 - 20539715
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||| |||||||| | ||||||| |||||| ||||||||| |||||| |||||||||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttga 20539715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 21782927 - 21782856
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||||||| ||| | ||||||| |||  | |||||||||||||||| ||||||||||||||||    
T  21782927 ctatgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataatttgagaa 21782856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 19536507 - 19536439
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||  |||||||| ||||||||| |||||| | ||||||||||||||  ||||||||||||    
T  19536507 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataatttga 19536439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 23717976 - 23718047
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| ||||||||||||||||||||||||    
T  23717976 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaa 23718047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 24105648 - 24105719
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| ||||||||||||||||||||||||    
T  24105648 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaa 24105719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 21616737 - 21616783
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| |||||| || ||||||||||||||||||||||||||||||    
T  21616737 gacacgacacggacacggacacgccgacaccgctaataatttgagaa 21616783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 21624217 - 21624282
Alignment:
Q  160 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataattt 225  Q
    |||||||| || |||||||| ||| ||||| ||| || |||||||||||||||| |||||||||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattt 21624282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 14996333 - 14996265
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||||||||| |||||||| | | ||| | |||||| ||||||| |||||||| |||||||||||||    
T  14996333 actatgaagcacggatacggacgcag-acatgacacggacactgacaagccgacacagctaataatttga 14996265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 4332891 - 4332943
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttg 226  Q
    |||||| ||||||||||||| |||||| ||| |||||||| | ||||||||||    
T  4332891 acggacaccggacacggcacagatacttacatgccgacactgataataatttg 4332943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 18276486 - 18276542
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| |||||||||  || || ||||| | |||||||||||||||||||||||||    
T  18276486 acggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaa 18276542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 21374810 - 21374740
Alignment:
Q  158 actatgaagcacgaatacggactccggacacgg--cacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||||||||| |||||||| | |||||| |  |||||| ||| |||||||||||| |||||||||||||    
T  21374810 actatgaagcacggatacggacac-ggacaccggacacggacactaacacgccgacacagctaataatttga 21374740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 40917716 - 40917769
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| ||||||||| ||||||||||||||||||||||| |||||||||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatttga 40917769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 398858 - 398806
Alignment:
Q  175 cggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatttga 398806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 6427323 - 6427371
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataatttgagaa 6427371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 2896207 - 2896159
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||  |||||| |||||||||||||||||||||||||||||||||    
T  2896207 cggacacaacacggacactgacacgccgacaccgctaataatttgagaa 2896159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 5376609 - 5376538
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||| ||||| |||| || |||||||||| |||||| ||| |||||||||||||||||||||||| ||||    
T  5376609 actatgaggcacgtatacaga-tccggacacgacacggacactaacacgccgacaccgctaataatttaagaa 5376538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 5927449 - 5927381
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||| ||||||| |||||||| ||||||||| |||||| ||||||||||  |||| |||||||||||||    
T  5927449 ctattaagcacggatacggacaccggacacgacacggacactgacacgctaacactgctaataatttga 5927381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 10572690 - 10572627
Alignment:
Q  167 cacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||| |||||||| ||||||||| || | | ||||||||||||||||| |||||||||||||||    
T  10572690 cacggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaa 10572627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 48040558 - 48040503
Alignment:
Q  172 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||| ||||||||| |||||| |||||||||||||||| | |||||||||||    
T  48040558 atacggacaccggacacgacacggacactgacacgccgacacagataataatttga 48040503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 12443538 - 12443498
Alignment:
Q  190 gcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  12443538 gcacggatacggacacgccgacacagctaataatttgagaa 12443498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 17831601 - 17831569
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||||||||||||||||||||    
T  17831601 actgacacgccgacaccgctaataatttgagaa 17831569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 36878450 - 36878482
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||||||||||||||||||||    
T  36878450 actgacacgccgacaccgctaataatttgagaa 36878482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 39130876 - 39130805
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||| |||||||| ||||||||| || ||||| |||||||| |||||   ||||||||| ||||    
T  39130876 ctatgaagcacggatacggacaccggacacgacatggatattgacacgctgacactattaataattttagaa 39130805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 1486796 - 1486750
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||| ||| ||||||||||||||||| ||||| |||||||||||||    
T  1486796 ccggatacgacacggatactgacacgctgacacagctaataatttga 1486750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 9709795 - 9709841
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| |||||| ||||||| ||| |||||||||||||||||||||    
T  9709795 gacacgacacggacactgacatgcctacaccgctaataatttgagaa 9709841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 34298411 - 34298457
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| |||||| |||||||| |||||||| |||||||||||||||    
T  34298411 gacacgacacggaaactgacacaccgacaccactaataatttgagaa 34298457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 1262856 - 1262905
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||| |||| | || ||||||||||||| ||||||||||||||||    
T  1262856 ccggacacgacacgaacacggacacgccgacacagctaataatttgagaa 1262905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 48450673 - 48450628
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||| |||||| ||||||||||| |||| |||||||||||||    
T  48450673 cggacacgacacggacactgacacgccaacacagctaataatttga 48450628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 609528 - 609496
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||||||| |||||||||||||||    
T  609528 actgacacgccgacaccactaataatttgagaa 609496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 3490460 - 3490428
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||| ||||||||||||||||    
T  3490460 actgacacgccgacactgctaataatttgagaa 3490428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 18556533 - 18556497
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||||||||||||| |||||||||||||    
T  18556533 cacggacactgacacgccgacacagctaataatttga 18556497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 19562691 - 19562659
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||| ||||||||||||||||    
T  19562691 actgacacgccgacactgctaataatttgagaa 19562659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 34315663 - 34315722
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaa 219  Q
    |||||||||||| ||||||| |  ||||||| |||||||||||||| |||||||| |||||    
T  34315663 ctatgaagcacggatacgga-tatggacacgacacggatactgacatgccgacacagctaa 34315722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 38503285 - 38503341
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| | ||||| | |||||| ||| |||| ||||||||||||||||||||||||    
T  38503285 acggacacgggacatgacacggacactaacacaccgacaccgctaataatttgagaa 38503341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 46348460 - 46348424
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||||||||||||| |||||||||||||    
T  46348460 cacggacactgacacgccgacacagctaataatttga 46348424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 13349 - 13421
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  |||||||||||||||    
T  13349 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaa 13421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 20122 - 20190
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||  |||||||| ||||||||| |||||| | |||||||||||||| |||||||||||||    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttga 20190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 21978 - 21906
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  |||||||||||||||    
T  21978 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaa 21906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 8383207 - 8383278
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||| |||||| | |||||| | ||||||| |||||| | |||||||||||||||||||||||||||||||    
T  8383207 ctatgtagcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaa 8383278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 8842280 - 8842346
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataattt 225  Q
    |||||||||||| |||||||| ||||| ||| |||||| | ||||| ||||||||||||||||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataattt 8842346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 24205135 - 24205079
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| ||||||||| |||||| |||||||||||||||| | ||||||||||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaa 24205079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 10335386 - 10335327
Alignment:
Q  168 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||| |||||| ||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  10335386 acgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttga 10335327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 28917966 - 28918019
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| ||||||||| |||||| |||||||||||||||  |||||||||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttga 28918019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 4991061 - 4991005
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| ||| ||||| |||||| |||||||| ||||||||||||||| ||||||||    
T  4991061 acggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaa 4991005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 5407325 - 5407285
Alignment:
Q  190 gcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  5407325 gcacggataccgacacgccgacaccgctaaaaatttgagaa 5407285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 55401025 - 55401093
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||  |||||||| ||||| ||| |||||| ||||| ||||||||||  ||||||||||||    
T  55401025 ctatgaagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttga 55401093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 5441128 - 5441069
Alignment:
Q  172 atacggac-tccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||| |||||||||| ||| || |||||||||||| ||||||||| ||||||||||    
T  5441128 atacggacatccggacacgacacagacactgacacgccgtcaccgctaaaaatttgagaa 5441069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 8587129 - 8587062
Alignment:
Q  160 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||||||  |||||||| ||||||| | |||||| ||||||||||||||||  ||| ||||||||    
T  8587129 tatgaagcacagatacggacaccggacatgacacggacactgacacgccgacacatctagtaatttga 8587062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 9800014 - 9800061
Alignment:
Q  183 ggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||| |||| | ||||||||||||||||| |||||||||||||||    
T  9800014 ggacacgacacgtacactgacacgccgacacctctaataatttgagaa 9800061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 21720746 - 21720785
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  21720746 cacggacactgacacgccgacaccgataataatttgagaa 21720785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 32429488 - 32429418
Alignment:
Q  160 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||| |||||||| ||||||||  |||| | | |||||| |||||| |||||||||||| ||||    
T  32429488 tatgaagcacgtatacggacaccggacacaacacgaacattgacactccgacaacgctaataatttaagaa 32429418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 15796388 - 15796335
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| ||||||||| |||||| | |||||||||||||| | |||||||||||    
T  15796388 acggacaccggacacgacacggacaatgacacgccgacacagttaataatttga 15796335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 26492291 - 26492246
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||| |||||| |||||||||||||||  |||||||||||||    
T  26492291 cggacacgacacggacactgacacgccgacagagctaataatttga 26492246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 2620139 - 2620091
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||| | |||| ||||||||||||||||| ||||| |||||||||    
T  2620139 cggacacgactcggacactgacacgccgacaccactaatcatttgagaa 2620091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 3865633 - 3865597
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||||||||||||| |||||||||||||    
T  3865633 cacggacactgacacgccgacacagctaataatttga 3865597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 10318111 - 10318075
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||||||||||||| |||||||||||||    
T  10318111 cacggacactgacacgccgacacagctaataatttga 10318075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 14223962 - 14223891
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||||||||| || ||| | ||||||| ||| || || ||||||||||||| | ||||||||||||||    
T  14223962 actatgaagcacgaacacagacac-ggacacgacacagacaccgacacgccgacacagataataatttgagaa 14223891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 25064859 - 25064927
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||| ||||  ||| ||| ||||||||| ||| || | ||||||||||||||||||||| ||||||    
T  25064859 ctatgaaacacgggtacagacaccggacacgacacagacattgacacgccgacaccgctaatgatttga 25064927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 8763 - 8816
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| ||||||||| |||||| |||||||||||||||| |||||||||||||    
T  8763 acggacaccggacacgacacggacactgacacgccgacacagctaataatttga 8816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 225362 - 225306
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| ||||||||| |||||| |||||||||||||||| | ||||||||||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataatttgagaa 225306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 241559 - 241611
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttg 226  Q
    |||||| ||||||||| |||||| |||||||||||||||| ||||||||||||    
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataatttg 241611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 92790 - 92828
Alignment:
Q  192 acggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  92790 acggacactgacacgccgacaccgctaataatttgagaa 92828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 178925 - 178860
Alignment:
Q  162 tgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||||| |||  ||| ||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  178925 tgaagcacggatattgacaccggacacgacacggacactgacacgccgacacaactaataatttga 178860  T

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Target: scaffold0018; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 192325 - 192287
Alignment:
Q  192 acggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  192325 acggacactgacacgccgacaccgttaataatttgagaa 192287  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 23293080 - 23293027
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| ||||||||| |||||| | |||||||||||||| |||||||||||||    
T  23293080 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttga 23293027  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 17345485 - 17345453
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||||||||||||||||||||    
T  17345485 actgacacgccgacaccgctaataatttgagaa 17345453  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 35723455 - 35723423
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||||||||||||||||||||||||    
T  35723455 actgacacgccgacaccgctaataatttgagaa 35723423  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 847918 - 847972
Alignment:
Q  176 ggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||| ||||||||| ||| || |||||||||||||  ||||||||||||||||||    
T  847918 ggaccccggacacgacacagacactgacacgccgatgccgctaataatttgagaa 847972  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 20633450 - 20633503
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| || ||||||  ||||| ||||||||| ||||||||||||||||||||    
T  20633450 acggacaccagacacgatacggacactgacacgtcgacaccgctaataatttga 20633503  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 36635296 - 36635345
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    ||||||||| | |||| ||||||||||| ||||| |||||||||||||||    
T  36635296 ccggacacgactcggacactgacacgccaacaccactaataatttgagaa 36635345  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 24343472 - 24343528
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| ||||||||| ||||||  | ||||||||||||| | ||||||||||||||    
T  24343472 acggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaa 24343528  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 28084475 - 28084539
Alignment:
Q  163 gaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||  |||||||| ||||||||| ||| ||  ||||||||||||||| ||||| |||||||    
T  28084475 gaagcacagatacggacaccggacacgacacagacgctgacacgccgacacagctaagaatttga 28084539  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 28720827 - 28720894
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||| |||| ||| | ||||||| |||| | ||||||| |||||||| |||||||||||||    
T  28720827 ctatgaagcacgtatacagacac-ggacacgacacgaacactgacatgccgacacagctaataatttga 28720894  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 30298928 - 30298964
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||||||||||||| |||||||||||||    
T  30298928 cacggacactgacacgccgacacagctaataatttga 30298964  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 30327796 - 30327832
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||||||||||||| |||||||||||||    
T  30327796 cacggacactgacacgccgacacagctaataatttga 30327832  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 556 - 503
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| ||| ||||| |||||| ||||| |||||||||| |||||||||||||    
T  556 acggacaccgaacacgccacggacactgatacgccgacactgctaataatttga 503  T

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Target: scaffold0475 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 3281 - 3337
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| ||||||||| |||||||||||||||| |||||  ||||| ||||| ||||    
T  3281 acggacaccggacacgacacggatactgacacgtcgacaatgctaacaattttagaa 3337  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 51793 - 51829
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||||||||||||| |||||||||||||    
T  51793 cacggacactgacacgccgacacagctaataatttga 51829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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