View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_1D_low_15 (Length: 223)
Name: NF0154_1D_low_15
Description: NF0154_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_1D_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 9298325 - 9298407
Alignment:
| Q |
127 |
catggcagaaaccgacagatccgaaagnnnnnnncatagttgtgagaagatctagtatctaatgatgaacaacaaagaaaaag |
209 |
Q |
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| T |
9298325 |
catggcagaaaccgacagatccgaaagaaaaaaacataattgtgagaagatctagtatctaatgatgaacaacaaagaaaaag |
9298407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 9298201 - 9298233
Alignment:
| Q |
6 |
aggttggaatcaaaatgcatgggatgaaaccct |
38 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
9298201 |
aggttggaatcaaaatgcatgggatgaaaccct |
9298233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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