View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_1D_low_16 (Length: 221)
Name: NF0154_1D_low_16
Description: NF0154_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_1D_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 41447828 - 41447638
Alignment:
| Q |
24 |
cgaatttggcgtctttagggagaaaagattcaagattaagcctcatgaataccacgttatgaaagtactattactattggagccaatatctttagacaaa |
123 |
Q |
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| T |
41447828 |
cgaatttggcgtctttagagagaaaagattcaaggttaagcctcatgaataccacattatgaaagtactattactattggagccaatatctttagacaaa |
41447729 |
T |
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| Q |
124 |
tcaaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattcatctca |
214 |
Q |
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| T |
41447728 |
tcaaactagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacatagattcatctca |
41447638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 45 - 214
Target Start/End: Complemental strand, 41458027 - 41457859
Alignment:
| Q |
45 |
gaaaagattcaagattaagcctcatgaataccacgttatgaaagtactattactattggagccaatatctttagacaaatcaaattagcatcaaaattaa |
144 |
Q |
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| T |
41458027 |
gaaaagattcaacgttaagcctcatgaacaccacgttatgaaagtactattactattggagccaatatctttagacaaaacaaattagcatcaaacttaa |
41457928 |
T |
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| Q |
145 |
caaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattcatctca |
214 |
Q |
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| T |
41457927 |
caaggtaaaggaattaaggaac-ttttgaatattgaaacttagaaaccagagctacataagttcatctca |
41457859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 41441352 - 41441238
Alignment:
| Q |
26 |
aatttggcgtctttagggagaaaagattcaagattaagcctcatgaataccacgttatgaaagtactattactattggagccaatatctttagacaaatc |
125 |
Q |
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| T |
41441352 |
aatttggcacctttattgagaaaatattcaaggttgagcatcaacaataccacttgatcaaagtactattactatataagtcaatatcttttgacaaaac |
41441253 |
T |
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| Q |
126 |
aaattagcatcaaaa |
140 |
Q |
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|||||| ||| |||| |
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| T |
41441252 |
aaattatcattaaaa |
41441238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 89 - 214
Target Start/End: Original strand, 16418670 - 16418794
Alignment:
| Q |
89 |
tactattactattggagccaatatctttagacaaatcaaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttaga |
188 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||| |||| | |||||||||||||| |
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| T |
16418670 |
tactattactatttgagccaatatctttagacaaaacaaatcagcatcaaacttaacaaggtaaaggaattaaggaac-ttttgaatattgaaacttaga |
16418768 |
T |
|
| Q |
189 |
aaccagagttacataaattcatctca |
214 |
Q |
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| T |
16418769 |
aaccagagctacataagttcatctca |
16418794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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