View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_1D_low_2 (Length: 595)
Name: NF0154_1D_low_2
Description: NF0154_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_1D_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 94 - 509
Target Start/End: Original strand, 931835 - 932250
Alignment:
| Q |
94 |
gactacaattcacaatgtctttgatttgaacttcaatttcaatagtttatagtatgttttacaattttctctattaaccattcagaaagaaaagaacaac |
193 |
Q |
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| T |
931835 |
gactacaattcacaatgtctttgatttgaacttcaatttcaatagtttatagtatgttttacaattttctctattaaccattcagaaagaaaagaacaac |
931934 |
T |
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| Q |
194 |
agatcattggaagaggttcataagcccgattacgtggcgctgtaagtggattgagttgaaactgaggtcacttcactctcaagaacgtaaatatgaaaaa |
293 |
Q |
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| T |
931935 |
agatcattggaagaggttcataagcccgattacgtggcgctgtaagtggattgagttgaaactgaggtcacttcactctcaagaacgtaaatatgaaaaa |
932034 |
T |
|
| Q |
294 |
gagcttgcggcactcaattatacaaagcagcttgatttttcacacttaacattagatggttccggcatcaaatcggtacctatttctggtcggatgcata |
393 |
Q |
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| T |
932035 |
gagcttgcggcactcaattatacaaagcagcttgatttttcacacttaacattagatggttccggcatcaaatcggtacctatttctggtcggatgcata |
932134 |
T |
|
| Q |
394 |
ggaataaaattatgaagaggnnnnnnngagtaagagttgaagagaaatgtgatttagcatcacacatgtctaaccatactttattctcctactatggtat |
493 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
932135 |
ggaataaaattatgaagaggaaaaaaagagtaagagttgaagagaaatgtgatttagcatcacacatgtctaaccatactttattctcctactatggtat |
932234 |
T |
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| Q |
494 |
gccatttccttatata |
509 |
Q |
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|||||||||||||||| |
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| T |
932235 |
gccatttccttatata |
932250 |
T |
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